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Evolution caught in the act: Scientists measure how quickly genomes change
Physorg.com ^ | January 1, 2010 | Max-Planck-Gesellschaft

Posted on 01/02/2010 10:57:44 AM PST by Restore

Mutations are the raw material of evolution. Scientists at the Max Planck Institute for Developmental Biology in Tubingen, Germany, and Indiana University in Bloomington have now been able to measure for the first time directly the speed with which new mutations occur in plants. Their findings shed new light on a fundamental evolutionary process. They explain, for example, why resistance to herbicides can appear within just a few years.

"While the long term effects of genome mutations are quite well understood, we did not know how often new mutations arise in the first place," said Detlef Weigel, director at the Max Planck Institute in Germany. It is routine today to compare the genomes of related animal or plant species. Such comparisons, however, ignore mutations that have been lost in the millions of years since two species separated. The teams of Weigel and his colleague Michael Lynch at Indiana University therefore wanted to scrutinize the signature of evolution before selection occurs. To this end, they followed all genetic changes in five lines of the mustard relative Arabidopsis thaliana that occurred during 30 generations. In the genome of the final generation they then searched for differences to the genome of the original ancestor.

The painstakingly detailed comparison of the entire genome revealed that in over the course of only a few years some 20 DNA building blocks, so called base pairs, had been mutated in each of the five lines. "The probability that any letter of the genome changes in a single generation is thus about one in 140 million," explains Michael Lynch.

To put it differently, each seedling has on average one new mutation in each of the two copies of its genome that it inherits from mum and dad. To find these tiny alterations in the 120 million base pair genome of Arabidopsis was akin to finding the proverbial needle in a haystack, says Weigel: "To ferret out where the genome had changed was only possibly because of new methods that allowed us to screen the entire genome with high precision and in very short time." Still, the effort was daunting: To distinguish true new mutations from detection errors, each letter in each genome had to be checked 30 times.

The number of new mutations in each individual plant might appear very small. But if one starts to consider that they occur in the genomes of every member of a species, it becomes clear how fluid the genome is: In a collection of only 60 million Arabidopsis plants, each letter in the genome is changed, on average, once. For an organism that produces thousands of seeds in each generation, 60 million is not such a big number at all.

Apart from the speed of new mutations, the study revealed that not every part of the genome is equally affected. With four different DNA letters, there are six possible changes—but only one of these is responsible for half of all the mutations found. In addition, scientists can now calculate more precisely when species split up. Arabidopsis thaliana and its closest relative, Arabidopsis lyrata, differ in a large number of traits including size and smell of flowers or longevity: Arabidopsis lyrata plants often live for years, while Arabidopsis thaliana plants normally survive only for a few months. Colleagues had previously assumed that only five million years had passed by since the two species went their separate ways. The new data suggest instead that the split occurred already 20 million years ago. Similar arguments might affect estimates of when in prehistory animals and plants were first domesticated.

On a rather positive note, the results of the US-German team show that in sufficiently large populations, every possible mutation in the genome should be present. Thus, breeders should be able to find any simple mutation that has the potential to increase yield or make plants tolerate drought in a better manner. Finding these among all the unchanged siblings remains nevertheless a challenging task. On the other hand, the new findings easily explain why weeds become quickly resistant to herbicides. In a large weed population, a few individuals might have a mutation in just the right place in their genome to help them withstand the herbicide. "This is in particular a problem because herbicides often affect only the function of individual genes or gene products," says Weigel. A solution would be provided by herbicides that simultaneously interfere with the activity of several genes.

Turning to the larger picture, Weigel suggests that changes in the human genome are at least as rapid as in Arabidopsis: "If you apply our findings to humans, then each of us will have on the order of 60 new mutations that were not present in our parents." With more than six billion people on our planet, this implies that on average each letter of the human genome is altered in dozens of fellow citizens. "Everything that is genetically possible is being tested in a very short period," adds Lynch, emphasizing a very different view than perhaps the one we are all most familiar with: that evolution reveals itself only after thousands, if not millions of years.


TOPICS: Science
KEYWORDS: creation; evolution; godsgravesglyphs; science
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Fascinating
1 posted on 01/02/2010 10:57:45 AM PST by Restore
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To: Restore

I believe in creation and evolution, obviously changes have occured over time, but evolution does not explain how the moon got there


2 posted on 01/02/2010 11:01:28 AM PST by edzo4 (NoBama 2012)
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To: Restore

Get ready for the “but this is plants, not people” AND “this isn’t speciation” (it is) crows in 3...2...1...


3 posted on 01/02/2010 11:02:30 AM PST by freedumb2003 (Communism comes to America: 1/20/2009. Keep your powder dry, folks. Sic semper tyrannis)
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To: freedumb2003

Gosh, I’m convinced. not.


4 posted on 01/02/2010 11:04:09 AM PST by Recovering_Democrat
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To: edzo4

>>ut evolution does not explain how the moon got there<<

Nor should it. That is closer to geology. Chemistry doesn’t explain it either.


5 posted on 01/02/2010 11:04:46 AM PST by freedumb2003 (Communism comes to America: 1/20/2009. Keep your powder dry, folks. Sic semper tyrannis)
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To: Recovering_Democrat

>>Gosh, I’m convinced. not.<<

And your refutation is...?


6 posted on 01/02/2010 11:05:42 AM PST by freedumb2003 (Communism comes to America: 1/20/2009. Keep your powder dry, folks. Sic semper tyrannis)
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To: Restore
God created evolution.

Nice job, God. Cool stuff.

7 posted on 01/02/2010 11:07:00 AM PST by dead (I've got my eye out for Mullah Omar.)
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To: dead

>>Nice job, God. Cool stuff.<<

The God that created Evolution as part of a Universe that follows extremely complex rules that can be discovered and harnessed is awesome, almost beyond imagination.

A God that *zaps* things into existence is Gandalf writ large and easy for small/primitive minds to comprehend. Science in 2000 BC was unheard of except as recording empirical effects of phenomenon.

My God, who sent His Son to die for us all, created the complex Universe — and gave Man the ability to explore it, although we will never understand it all.


8 posted on 01/02/2010 11:18:52 AM PST by freedumb2003 (Communism comes to America: 1/20/2009. Keep your powder dry, folks. Sic semper tyrannis)
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To: dead

BTW — I am just expanding on your succinct post :)


9 posted on 01/02/2010 11:19:41 AM PST by freedumb2003 (Communism comes to America: 1/20/2009. Keep your powder dry, folks. Sic semper tyrannis)
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To: Restore
DNA’s inability to copy itself without mistakes -- mutation – means that evolution is inevitable. Natural selection does no more than capitalize on that fact. Species, too, are by-products of the Mendelian machinery. They emerge from the apparatus of inheritance, from the ways that genes join forces to do their job. If genes for size, shape or behavior work together only in the right combinations, then, as different mixtures build up in different places, the origin of species becomes inevitable. Once established, they may evolve further, but, of their nature, species happen by accident.

Steve Jones, “Darwin’s Ghost,” pages 170-171.

10 posted on 01/02/2010 11:20:54 AM PST by OldNavyVet
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To: Restore

bfltr


11 posted on 01/02/2010 11:25:12 AM PST by mnehring
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To: edzo4
but evolution does not explain how the moon got there

Because evolution isn't astronomy or geophysics.

12 posted on 01/02/2010 11:26:03 AM PST by mnehring
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To: edzo4

Personally, I am more a believer in devolution. I think all the genetic information is there originally, and that some of it is lost lost or changed over time............


13 posted on 01/02/2010 11:27:04 AM PST by PeterPrinciple ( Seeking the truth here folks.)
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To: freedumb2003

+1


14 posted on 01/02/2010 11:27:10 AM PST by mnehring
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To: Restore

The science of wishful thinking delves deeper into its understanding of the fundamental principle of randomness.


15 posted on 01/02/2010 11:28:09 AM PST by BlueYonder
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To: freedumb2003

I know, explain that to the liberals!


16 posted on 01/02/2010 11:31:45 AM PST by edzo4 (NoBama 2012)
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To: edzo4

can someone please tell me when evolution stopped?


17 posted on 01/02/2010 11:32:23 AM PST by remaxagnt (`)
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To: edzo4
"... evolution does not explain how the moon got there."

We live not a hundred million but four thousand five hundred million years since the Earth was spun from dust and rock around the sun. The evidence comes not from our own planet, but from its satellite. The Moon flew off its parent after a giant impact. Because it stayed small, cold and undisturbed it gives a better picture of the past than its parent. A quick trip by the Apollo XI mission was enough to date it. The Earth’s turmoil makes it harder to trace its own origin. Its oldest rocks, found in Greenland and Western Australia, are just under four billion years old.

Steve Jones, “Darwin’s Ghost,” page 195.

18 posted on 01/02/2010 11:35:03 AM PST by OldNavyVet
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To: remaxagnt

>>can someone please tell me when evolution stopped?<<

It hasn’t. You have vestigial organs of no current use (the appendix, male teats, democrats) that are pretty clear signs that we are evolving still and shedding no longer useful parts (obviously some not quickly enough).


19 posted on 01/02/2010 11:36:09 AM PST by freedumb2003 (Communism comes to America: 1/20/2009. Keep your powder dry, folks. Sic semper tyrannis)
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To: BlueYonder

>>The science of wishful thinking delves deeper into its understanding of the fundamental principle of randomness.<<

And your refutation to the article is? (and, although it doesn’t use the term, it isn’t “random” it is stochastic)


20 posted on 01/02/2010 11:37:32 AM PST by freedumb2003 (Communism comes to America: 1/20/2009. Keep your powder dry, folks. Sic semper tyrannis)
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