WASHINGTON, June 11— The General Accounting Office, an investigative arm of Congress, said today that ''damage, theft, vandalism and pranks did occur in the White House complex'' in the presidential transition from Bill Clinton to George W. Bush. The agency put the cost at $13,000 to $14,000, including $4,850 to replace computer keyboards, many with damaged or missing W keys. Some of the damage, it said, was clearly intentional. Glue was smeared on desk drawers. Messages disparaging President Bush were left on signs and in telephone voice mail. A few of the messages used profane or obscene language. ''A Secret...