I am 51 and 5'9". I was on a low fat diet for about 3.5 years. I lost about 70 lbs. From 250 to 180. After I reached 180 lbs I started to increase my carbs. I ate what I thought was healthy. Most of the carbs were whole grain stuff. I don't think I have had a piece of white bread for 3 yrs. Anyway I was and still running 25 miles per week and doing about 4hrs per week of strength training. But over time I gained back to 205. I am now back to around 187 as of this morning. I started on the Atkins Diet about 6 to 7 weeks ago and lost almost 20 lbs. Now for your question. The first couple of days I was on the Diet I seemed to not have the endurance I had before I started the diet. But after that I guess my body adjusted and I was back to normal if not better. I am able to run faster longer now. But that could be because of the weight loss.
I have also notice I am able to lift heavier than I was before I started the Atkins Diet. Which means I haven't lost any muscle mass and have most likely gain muscle mass.