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Mitochondrial DNA Mutation Rates
University of North Carlolina Computer Science Department website ^ | from 1997 to present | David Plaistid

Posted on 09/01/2002 4:20:09 PM PDT by Ahban

Mitochondrial DNA Mutation Rates

David A. Plaisted

Recently an attempt was made to estimate the age of the human race using mitochondrial DNA. This material is inherited always from mother to children only. By measuring the difference in mitochondrial DNA among many individuals, the age of the common maternal ancestor of humanity was estimated at about 200,000 years. A problem is that rates of mutation are not known by direct measurement, and are often computed based on assumed evolutionary time scales. Thus all of these age estimates could be greatly in error. In fact, many different rates of mutation are quoted by different biologists.

It shouldn't be very hard explicitly to measure the rate of mutation of mitochondrial DNA to get a better estimate on this age. From royal lineages, for example, one could find two individuals whose most recent common maternal ancestor was, say, 1000 years ago. One could then measure the differences in the mitochondrial DNA of these individuals to bound its mutation rate. This scheme is attractive because it does not depend on radiometric dating or other assumptions about evolution or mutation rates. It is possible that in 1000 years there would be too little difference to measure. At least this would still give us some useful information.

(A project for creation scientists!)

Along this line, some work has recently been done to measure explictly the rate of substitution in mitochondrial DNA. The reference is Parsons, Thomas J., et al., A high observed substitution rate in the human mitochondrial DNA control region, Nature Genetics vol. 15, April 1997, pp. 363-367. The summary follows:

"The rate and pattern of sequence substitutions in the mitochondrial DNA (mtDNA) control region (CR) is of central importance to studies of human evolution and to forensic identity testing. Here, we report a direct measurement of the intergenerational substitution rate in the human CR. We compared DNA sequences of two CR hypervariable segments from close maternal relatives, from 134 independent mtDNA lineages spanning 327 generational events. Ten subsitutions were observed, resulting in an empirical rate of 1/33 generations, or 2.5/site/Myr. This is roughly twenty-fold higher than estimates derived from phylogenetic analyses. This disparity cannot be accounted for simply by substitutions at mutational hot spots, suggesting additional factors that produce the discrepancy between very near-term and long-term apparent rates of sequence divergence. The data also indicate that extremely rapid segregation of CR sequence variants between generations is common in humans, with a very small mtDNA bottleneck. These results have implications for forensic applications and studies of human evolution." (op. cit. p. 363).

The article also contains this section: "The observed substitution rate reported here is very high compared to rates inferred from evolutionary studies. A wide range of CR substitution rates have been derived from phylogenetic studies, spanning roughly 0.025-0.26/site/Myr, including confidence intervals. A study yielding one of the faster estimates gave the substitution rate of the CR hypervariable regions as 0.118 +- 0.031/site/Myr. Assuming a generation time of 20 years, this corresponds to ~1/600 generations and an age for the mtDNA MRCA of 133,000 y.a. Thus, our observation of the substitution rate, 2.5/site/Myr, is roughly 20-fold higher than would be predicted from phylogenetic analyses. Using our empirical rate to calibrate the mtDNA molecular clock would result in an age of the mtDNA MRCA of only ~6,500 y.a., clearly incompatible with the known age of modern humans. Even acknowledging that the MRCA of mtDNA may be younger than the MRCA of modern humans, it remains implausible to explain the known geographic distribution of mtDNA sequence variation by human migration that occurred only in the last ~6,500 years.

One biologist explained the young age estimate by assuming essentially that 19/20 of the mutations in this control region are slightly harmful and eventually will be eliminated from the population. This seems unlikely, because this region tends to vary a lot and therefore probably has little function. In addition, the selective disadvantage of these 19/20 of the mutations would have to be about 1/300 or higher in order to avoid producing more of a divergence in sequences than observed in longer than 6000 years. This means that one in 300 individuals would have to die from having mutations in this region. This seems like a high figure for a region that appears to be largely without function. It is interesting that this same biologist feels that 9/10 of the mutations to coding regions of DNA are neutral. This makes the coding regions of DNA less constrained than the apparently functionless control region of the mitochondrial DNA!


TOPICS: Miscellaneous
KEYWORDS: creationsim; crevolist; dna; evolution; godsgravesglyphs; helixmakemineadouble; history; mtdna; multiregionalism; mutationrates
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To: Ahban
On the near end you did show me one skull that has me stumped. Not Mungo man, but the Lujiang skull. It is not a big picture, but it seems to cluster with a modern from what I see. What is the dating method for that 67K date? If that date is firm and it is a modern, that negates my hypothesis of a sudden start for man within 50K. It is not on the other link you had.

If you're having trouble finding it, so was I for a while. It's "Liujiang." I misspelled it.

This site calls the date in question, revising it into territory you like better. It has links to a good look at the skull. This site gives no date, but also has a good picture.

This discussion from sci.anthropology.paleo seems to confirm that Liujiang's dating is bad, so I guess you can forget that one.

101 posted on 09/03/2002 3:32:29 PM PDT by VadeRetro
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To: VadeRetro
I am not claiming a conspiracy. I am claiming a lack of objectivity on the part of evolutionary scientists- BIG TIME.

I just want to know what the criteria are so I can decide for myself. That is in the spirit of science, I hope you will agree.
102 posted on 09/03/2002 3:41:21 PM PDT by Ahban
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To: Ahban
4) I told you the gaps are on the near end and not the far.

You'll claim any gap, anywhere. But you're wishing away a whole community of skulls at Qafzeh, 100,000-92,000 years old on your own diagnosis versus the experts and Mungo Man (68,000) on a mumble.

Here's what I'm telling you. Neanderthals may or may not contribute to human ancestry. It's not that important because archaic Homo sapiens clearly didn't go extinct after giving rise to Neanderthals. The only question is whether modern humans (also arising from the archaic form) wiped out the Neanderthals or interbred to an extent. Numerous sites, especially in the Near East, show neanderthals that aren't quite neandertal (too "modern") and moderns that aren't quite modern (too neandertal). There's more detail on the web page I've linked at least twice.

You're inventing the difficulties here. The fossil record shows a perfectly lovely transition from chimpanzee to man, and you find Reasons Not To Believe. You apparently have no idea how your scratching and clawing away from simple hard evidence must be playing to anyone with a brain.

103 posted on 09/03/2002 3:56:25 PM PDT by VadeRetro
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To: VadeRetro
As far as a date for Mungo man, I always read (and taught) that Carbon 14 WAS the best way to date recent fossils.

uranium series- uranium has such a slow decay time, except for rare isotopes, that I understand it is next to useless for dates measured in the tens of thousands of years. It is more suitable for dates in the tens of millions of years. It margin of error is bigger than the whole age claimed for Mungo man (or have they some new way of measuring that has gotten that down?). Add this to all that, uranium dating is one of the more susceptable to contamination of decay products from outside the intial radioactive product. Its not like potassium-argon where you are pretty sure all of the argon in the sample cam from potassium that was orginally there.

electron spin resonance- I don't know enough about this, but will check it out. Does it date the SOIL, or the SPECIMEN?

optically-stimulated luminescence- can give a maximum age only. You can't know who charged with sunlight those things were when buried.

With Lujiang man out of the mix, Mungo man is your best bone by far. A 62K modern in AUSTRALIA with genes still present today rules out any creationist scenario I know of- and some evo ones. But it C-14 verses electron spin in my mind. I gotta check that out more.

I have conferences tonight. Will have to dive in tomorrow.

Goodnight.
104 posted on 09/03/2002 3:59:17 PM PDT by Ahban
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To: Ahban
I am claiming a lack of objectivity on the part of evolutionary scientists- BIG TIME.

In psychiatry, that's called "projection."

105 posted on 09/03/2002 4:07:14 PM PDT by VadeRetro
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To: Ahban
I can't help but notice that you're getting all your arguments now from ReasonstoBelieve. Clearly, you're hanging on the merest mumbles out of Hugh Ross's mouth. What he said--or what you say he said--does not jive with the facts. At best, he's very sloppy in his claims. Your discursus on the dating methods does not save his (or whosever) butt.

It appears that everything you've said or intend to say is is in this article. Thus, the Glenn Morton Rebuttal would apply.

106 posted on 09/03/2002 4:18:19 PM PDT by VadeRetro
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To: Ahban
This PDF paper discusses the uranium series dating tests in general and Mungo Man specifically. I'll admit it's a bit over my head but its conclusions don't square with yours.

One thing you're probably not counting on:

Uranium-series dating relies on the observation that a fresh bone buried in soil takes up uranium from ground-water very readily, but the important daughter elements are mostly insoluble in water and therefore are not incorporated into the bone as it fossilizes. The conditions under which uranium uptake occurs, length of time taken, and whether uranium uptake or leaching continues to occur long after burial are not completely known and subject to considerable uncertainty.
They aren't measuring the decay of uranium already present when the fossil animal died. They're measuring uranium absorption by buried bone. Your whole model of the process is wrong.
107 posted on 09/03/2002 4:32:23 PM PDT by VadeRetro
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To: Ahban
As far as a date for Mungo man, I always read (and taught) that Carbon 14 WAS the best way to date recent fossils.

Carbon 14 is maxed out trying to age a fossil 68,000 years old. The difference in C14 between a 45,000 yo fossil and 68,000 yo one is probably negligible. The half-life is less than 6,000 years.

108 posted on 09/03/2002 4:42:25 PM PDT by VadeRetro
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To: Ahban
This estimate is made by evolutionists who don't want to lose their funding.

Ludicrous. It doesn't matter what papers I direct you to. They'll all be written by evolutionists. That's all you're going to get because there are no creationists who know how to make a statistical/mathematical model.

109 posted on 09/03/2002 4:53:50 PM PDT by Nebullis
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To: Ahban
OK, a better look at that paper convinces me. Your objection to uranium series dating is totally without merit. The half-lives involved in the precise dating are those of specific isotopes of proactinium and thorium (daugher elements in the uranium decay cascade).

One feature of uranium-series dating which can be exploited to learn something about uranium mobilization is that the method can provide two estimates of the age. This is because uranium has two naturally-occurring isotopes, 235 U and 238 U, each with a long-lived daughter of considerably different half-life, 231 Pa (T½ = 32.8 ka) and 230 Th (T½ = 75.4 ka>). In summarizing a large body of data where both of these uranium isotopes have been used to determine the ages of the samples, this paper attempts . . .
Emphasis mine.
110 posted on 09/03/2002 6:48:08 PM PDT by VadeRetro
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To: Ahban
A good "For Dummies" explanation of uranium series dating here.

While the uranium-lead system can measure intervals in the millions of years generally without problems from the intermediate isotopes, those intermediate isotopes with the longest half-lives span long enough time intervals for dating events less than several hundred thousand years ago. (Note that these intervals are well under a tenth of a percent of the half-lives of the long-lived parent uranium and thorium isotopes discussed earlier.) Two of the most frequently-used of these "uranium-series" systems are uranium-234 and thorium-230.

. . .

The uranium-234 / thorium-230 method is now being used to date animal and human bones and teeth. Previously, dating of anthropology sites had to rely on dating of geologic layers above and below the artifacts. But with improvements in this method, it is becoming possible to date the human and animal remains themselves. Work to date shows that dating of tooth enamel can be quite reliable. However, dating of bones can be more problematic, as bones are more susceptible to contamination by the surrounding soils. As with all dating, the agreement of two or more methods is highly recommended for confirmation of a measurement. If the samples are beyond the range of radiocarbon (e.g., > 40,000 years), a second method for confirmation of thorium-230 ages may need to be a non-radiometric method such as ESR or TL, mentioned below.

Which is just what was done for Mungo Man, as already noted. Three different methods.

(The stuff you find out you don't know when you try to be your own expert on everything since the authorities aren't objective!)

111 posted on 09/03/2002 7:06:32 PM PDT by VadeRetro
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To: Nebullis
Ludicrous. It doesn't matter what papers I direct you to. They'll all be written by evolutionists. That's all you're going to get because there are no creationists who know how to make a statistical/mathematical model.

Succintly put.

When Dr. Hugh Ross writes about it, Ahban will read about it.

112 posted on 09/03/2002 7:23:10 PM PDT by VadeRetro
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To: Ahban
Do you know what the criteria are for classifiying something an 'archaic homo' rather than a mideastern or 'progressive neandertal'?

When a paleontologist calls a find 'archaic' this or that, it means only one thing - it cannot be properly classified because there is insufficient evidence to do so. This lack may be questions about date, or questions as to similarity with other specimens. If they are classifiable, if they are known to be something, they are classified into either a known species or into a new species. In other words archaic means BIG QUESTION MARK.

113 posted on 09/03/2002 7:55:11 PM PDT by gore3000
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To: Kyrie
ROTFLMAO! (Re: post 6) I'm quoting you, buckaroo. LOL!
114 posted on 09/03/2002 8:03:03 PM PDT by Billthedrill
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To: gore3000
Do you think that there is any major theological problems if special creation happened 200,000 years ago? And I'm talking about a special creation of the sort described in genesis with the animals, plants, and humans created specially, not evolved.
115 posted on 09/03/2002 8:03:07 PM PDT by realpatriot71
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To: Nebullis
Ludicrous. It doesn't matter what papers I direct you to. They'll all be written by evolutionists. That's all you're going to get because there are no creationists who know how to make a statistical/mathematical model.

We are down to insults I see. It is not ludicrous at all. It is only a model based on evolutionary assumptions, therefore it is proof of nothing at all. Let's remember how for a dozen years evolutionists had this model for mtDNA and never bothered to test it against real life. Let's remember how they assumed withoug conducting any experiments. Let's remember how once somebody did the hard work of looking at just how fast mtDNA changed all the assumptions were thrown down. Now you wish us to believe in more totally baseless assumptions??????

116 posted on 09/03/2002 8:03:19 PM PDT by gore3000
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To: gore3000
Gore3000:

We are down to insults I see. It is not ludicrous at all. It is only a model based on evolutionary assumptions, therefore it is proof of nothing at all. Let's remember how for a dozen years evolutionists had this model for mtDNA and never bothered to test it against real life. Let's remember how they assumed withoug conducting any experiments. Let's remember how once somebody did the hard work of looking at just how fast mtDNA changed all the assumptions were thrown down. Now you wish us to believe in more totally baseless assumptions??????

Sir, I am archiving your replies on this thread. Are you willing to base your future credibility upon this report on how fast mtDNA changes?

As new information is learned, one of use will end up looking like a fool.

Personally, I find the original thread article totally bogus, but if future data verifies it, then you have my respect and appologies.

117 posted on 09/03/2002 8:16:24 PM PDT by Hunble
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To: VadeRetro
When Dr. Hugh Ross writes about it, Ahban will read about it.

They mean to ask for evidence that they want to believe. I'll hunt up some models written on stone tablets.

118 posted on 09/04/2002 2:55:17 PM PDT by Nebullis
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To: Nebullis
I'll hunt up some models written on stone tablets.

See if you can piece together the one an overburdened Mel Brooks/Moses dropped in History of the World, Part I.

"I bring you these fifteen commandments . . ."

(Crash!)

" . . . ten commandments . . ."


119 posted on 09/04/2002 4:17:57 PM PDT by VadeRetro
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To: Kyrie
hey, what about the faction that thinks we were genetically modified by aliens, dammit?
120 posted on 09/04/2002 4:26:32 PM PDT by galt-jw
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