Free Republic
Browse · Search
News/Activism
Topics · Post Article

Skip to comments.

Researchers Trace Evolution to Relatively Simple Genetic Changes
Howard Hughes Medical Institute ^ | 25 Narcg 2005 | Staff

Posted on 05/31/2005 12:03:06 PM PDT by PatrickHenry

In a stunning example of evolution at work, scientists have now found that changes in a single gene can produce major changes in the skeletal armor of fish living in the wild.

The surprising results, announced in the March 25, 2005, issue of journal Science, bring new data to long-standing debates about how evolution occurs in natural habitats.

“Our motivation is to try to understand how new animal types evolve in nature,” said molecular geneticist David M. Kingsley, a Howard Hughes Medical Institute investigator at the Stanford University School of Medicine. “People have been interested in whether a few genes are involved, or whether changes in many different genes are required to produce major changes in wild populations.”

The answer, based on new research, is that evolution can occur quickly, with just a few genes changing slightly, allowing newcomers to adapt and populate new and different environments.

In collaboration with zoologist Dolph Schluter, at the University of British Columbia, Vancouver, Canada, and Rick Myers and colleagues at Stanford, Kingsley and graduate student Pamela F. Colosimo focused on a well-studied little fish called the stickleback. The fish — with three bony spines poking up from their backs — live both in the seas and in coastal fresh water habitats all around the northern hemisphere.


Wild populations of stickleback fish have evolved major changes in bony armor styles (shaded) in marine and freshwater environments. New research shows that this evolutionary shift occurs over and over again by increasing the frequency of a rare genetic variant in a single gene.

Sticklebacks are enormously varied, so much so that in the 19th century naturalists had counted about 50 different species. But since then, biologists have realized most populations are recent descendants of marine sticklebacks. Marine fish colonized new freshwater lakes and streams when the last ice age ended 10,000 to 15,000 years ago. Then they evolved along separate paths, each adapting to the unique environments created by large scale climate change.

“There are really dramatic morphological and physiological adaptations” to the new environments, Kingsley said.

For example, “sticklebacks vary in size and color, reproductive behavior, in skeletal morphology, in jaws and teeth, in the ability to tolerate salt and different temperatures at different latitudes,” he said.

Kingsley, Schluter and their co-workers picked one trait — the fish's armor plating — on which to focus intense research, using the armor as a marker to see how evolution occurred. Sticklebacks that still live in the oceans are virtually covered, from head to tail, with bony plates that offer protection. In contrast, some freshwater sticklebacks have evolved to have almost no body armor.

“It's rather like a military decision, to be either heavily armored and slow, or to be lightly armored and fast,” Kingsley said. “Now, in countless lakes and streams around the world these low-armored types have evolved over and over again. It's one of the oldest and most characteristic differences between stickleback forms. It's a dramatic change: a row of 35 armor plates turning into a small handful of plates - or even no plates at all.”

Using genetic crosses between armored and unarmored fish from wild populations, the research team found that one gene is what makes the difference.

“Now, for the first time, we've been able to identify the actual gene that is controlling this trait,” the armor-plating on the stickleback, Kingsley said

The gene they identified is called Eda, originally named after a human genetic disorder associated with the ectodysplasin pathway, an important part of the embryonic development process. The human disorder, one of the earliest ones studied, is called ectodermal dysplasia.

“It's a famous old syndrome,” Kingsley said. “Charles Darwin talked about it. It's a simple Mendelian trait that controls formation of hair, teeth and sweat glands. Darwin talked about `the toothless men of Sind,' a pedigree (in India) that was striking because many of the men were missing their hair, had very few teeth, and couldn't sweat in hot weather. It's a very unusual constellation of symptoms, and is passed as a unit through families.”

Research had already shown that the Eda gene makes a protein, a signaling molecule called ectodermal dysplasin. This molecule is expressed in ectodermal tissue during development and instructs certain cells to form teeth, hair and sweat glands. It also seems to control the shape of - bones in the forehead and nose.

Now, Kingsley said, “it turns out that armor plate patterns in the fish are controlled by the same gene that creates this clinical disease in humans. And this finding is related to the old argument whether Nature can use the same genes and create other traits in other animals.”

Ordinarily, “you wouldn't look at that gene and say it's an obvious candidate for dramatically changing skeletal structures in wild animals that end up completely viable and healthy,' he said. "Eda gene mutations cause a disease in humans, but not in the fish. So this is the first time mutations have been found in this gene that are not associated with a clinical syndrome. Instead, they cause evolution of a new phenotype in natural populations.”

The research with the wild fish also shows that the same gene is used whenever the low armor trait evolves. “We used sequencing studies to compare the molecular basis of this trait across the northern hemisphere,” said Kingsley. “It doesn't matter where we look, on the Pacific coast, the East coast, in Iceland, everywhere. When these fish evolve this low-armored state they are using the same genetic mechanism. It's happening over and over again. It makes them more fit in all these different locations.”

Because this trait evolves so rapidly after ocean fish colonize new environments, he added, “we wondered whether the genetic variant (the mutant gene) that controls this trait might still exist in the ocean fish. So we collected large numbers of ocean fish with complete armor, and we found a very low level of this genetic variant in the marine population.”

So, he said, “the marine fish actually carry the genes for this alternative state, but at such a low level it is never seen;” all the ocean fish remain well-armored. “But they do have this silent gene that allows this alternative form to emerge if the fish colonize a new freshwater location.”

Also, comparing what happens to the ectodysplasin signaling molecule when its gene is mutated in humans, and in fish, shows a major difference. The human protein suffers "a huge amount of molecular lesions, including deletions, mutations, many types of lesions that would inactivate the protein," Kingsley said.

But in contrast, “in the fish we don't see any mutations that would clearly destroy the protein.” There are some very minor changes in many populations, but these changes do not affect key parts of the molecule. In addition, one population in Japan used the same gene to evolve low armor, but has no changes at all in the protein coding region. Instead, Kingsley said, “the mutations that we have found are, we think, in the (gene's) control regions, which turns the gene on and off on cue.” So it seems that evolution of the fish is based on how the Eda gene is used; how, when and where it is activated during embryonic growth.

Also, to be sure they're working with the correct gene, the research team used genetic engineering techniques to insert the armor-controlling gene into fish “that are normally missing their armor plates. And that puts the plates back on the sides of the fish,” Kingsley said.

“So, this is one of the first cases in vertebrates where it's been possible to track down the genetic mechanism that controls a dramatic change in skeletal pattern, a change that occurs naturally in the wild,” he noted.

“And it turns out that the mechanisms are surprisingly simple. Instead of killing the protein (with mutations), you merely adjust the way it is normally regulated. That allows you to make a major change in a particular body region - and produces a new type of body armor without otherwise harming the fish.”


TOPICS: Culture/Society; Miscellaneous; Philosophy
KEYWORDS: crevolist; evolution; genetics; godsgravesglyphs; helixmakemineadouble; massextinction; ordovician; phenryjerkalert; trilobite; trilobites
Navigation: use the links below to view more comments.
first previous 1-20 ... 401-420421-440441-460 ... 661-673 next last
To: b_sharp

These are very much the reasons why the IDists have not been able to show it statistically improbable.

That's not my point. You have yet to show how it could be statistically probable.

Yet! That it hasn't been done does not equate to can't be done. In that respect it does not serve the anti-evolution faction. They have no more an idea of its probability than any.

Consider caterpillars. A caterpillar has no obvious resemblance to a butterfly. The disparity in engineering is huge. The caterpillar has no legs, properly speaking, certainly no wings, no proboscis. How did a species that did not undergo metamorphosis evolve into one that did? Pupating looks like something you do well or not at all: If you don’t turn into something practical at the end, you don’t get another chance.

Think about this. The ancestor of a modern caterpillar necessarily was something that could reproduce already. To get to be a butterfly-producing sort of organism, it would have to evolve silk-extruding organs, since they are what you make a cocoon with. OK, maybe it did this to tie leaves together, or maybe the beast resembled a tent-caterpillar. (Plausibility over evidence.) Then some mutation caused it to wrap itself experimentally in silk. (What mutation? Are we serious?) It then died, wrapped, because it had no machinery to cause it to undergo the fantastically complex transformation into a butterfly. Death is usually a discouragement to reproduction.

Tell me how the beast can gradually acquire, by accident, the capacity gradually to undergo all the formidably elaborate changes from worm to butterfly, so that each intermediate form is a practical organism that survives. If evolutionists cannot answer such questions, the theory fails.

421 posted on 06/01/2005 4:50:14 PM PDT by garybob (More sweat in training, less blood in combat.)
[ Post Reply | Private Reply | To 382 | View Replies]

To: Right Wing Professor

422 posted on 06/01/2005 4:54:34 PM PDT by AndrewC (On vacation in Virginia Beach -- Don't you wish you were?)
[ Post Reply | Private Reply | To 420 | View Replies]

To: Right Wing Professor
Just like the sticklebacks.

Of course though I wouldn't argue thast specialization is always a plus.

423 posted on 06/01/2005 4:56:13 PM PDT by jwalsh07
[ Post Reply | Private Reply | To 305 | View Replies]

To: Doctor Stochastic

We really should nail those goalposts in place. Whomever thought of this moving tactic certainly knew a winner when he saw thunk it.


424 posted on 06/01/2005 5:02:04 PM PDT by b_sharp (Science adjusts theories to fit evidence, creationism distorts evidence to fit the Bible.)
[ Post Reply | Private Reply | To 372 | View Replies]

To: Right Wing Professor
its not so important that its a new resistance even while retaining an previous resistance, its the mechanism for this resistance, is it (corruption)shutting down a existing structure, is it modifying an existing structure or did it develop a completely new structure that never existed in the organism before. no doubt it can become resistant to multiple antibiotics through existing structures and modification/corruption.
You didn't address his point that you call him a liar or ignorant on.

duplication implies preexistence.
425 posted on 06/01/2005 5:03:15 PM PDT by flevit
[ Post Reply | Private Reply | To 411 | View Replies]

To: garybob
I guess you have so few ideas of your own, you have to plagiarize other people's. In this case FredOnEverything.

Or consider caterpillars. A caterpillar has no obvious resemblance to a butterfly. The disparity in engineering is huge. The caterpillar has no legs, properly speaking, certainly no wings, no proboscis. How did a species that did not undergo metamorphosis evolve into one that did? Pupating looks like something you do well or not at all: If you don’t turn into something practical at the end, you don’t get another chance.
Think about this. The ancestor of a modern caterpillar necessarily was something that could reproduce already. To get to be a butterfly-producing sort of organism, it would have to evolve silk-extruding organs, since they are what you make a cocoon with. OK, maybe it did this to tie leaves together, or maybe the beast resembled a tent-caterpillar. (Again, plausibility over evidence.) Then some mutation caused it to wrap itself experimentally in silk. (What mutation? Are we serious?) It then died, wrapped, because it had no machinery to cause it to undergo the fantastically complex transformation into a butterfly. Death is usually a discouragement to reproduction.
Tell me how the beast can gradually acquire, by accident, the capacity gradually to undergo all the formidably elaborate changes from worm to butterfly, so that each intermediate form is a practical organism that survives. If evolutionists cannot answer such questions, the theory fails.

Another example of Christian ethics in action; in this case 'Thou shalt not steal.' Riiiiight.

426 posted on 06/01/2005 5:14:44 PM PDT by Right Wing Professor
[ Post Reply | Private Reply | To 421 | View Replies]

To: Dan Evans
" No. There can be cross-species breeding but if two animals cannot breed together they are different species."

Dan, thanks for clearing that up for me. I read your post #288 to read that by definition, differing species cannot breed. Ergo lions and tigers should not be able to breed. My mistake, I see now you obviously meant that breeding across species does occur but the inability to breed, by definition, denotes a different species.
427 posted on 06/01/2005 5:14:59 PM PDT by darbymcgill
[ Post Reply | Private Reply | To 416 | View Replies]

To: darbymcgill

"Surely you don't expect me to digest 4.5 billion years of biochemistry in 30 minutes"

Take as long as you want to learn as much as you can. It really can't hurt.

Of course, dismissing more than a century of research by often brilliant biochemists without spending any time at all trying to "digest" their work seems a little, well, silly.


428 posted on 06/01/2005 5:18:02 PM PDT by daysailor (Sorry, I'm new here)
[ Post Reply | Private Reply | To 419 | View Replies]

To: daysailor
Thanks for your permission.

I'm sure I'll be seeing you post a scathing diatribe to the Professor for so easily dismissing garybob. I can hardly read these post for all the footnotes....

I'll be waiting.
429 posted on 06/01/2005 5:31:34 PM PDT by darbymcgill
[ Post Reply | Private Reply | To 428 | View Replies]

To: flevit
Very nice article by Safarti. However he makes an number of assumptions that are based on ideas whose intention is to discredit evolution using whatever interpretations that have a hope of doing so.

He starts out by describing and agreeing with evolution, then changes the definition of evoltion to mean information increase. Then goes on to assert that mutations cannot increase information. He has not even defined what 'information' means in this case let alone given reasons why this information needs to be part of the genome or what evidence there is that mutation decreases information in all cases.

He relies on pre-existing genes for any genetic change that might hint at an increase of information with "no" evidence to back it up. Every time someone comes up with an example of something that endangers AiG's preconceptions, they pop up with some contrived reason why it won't work.

Why does evolution need an increase of 'information'?
Why is Safarti's 'information' better than any other 'information'?
Why does a muation only decrease information?
Why are there 'simpler' organisms than humans with larger information bases for their complexity level?

430 posted on 06/01/2005 5:31:43 PM PDT by b_sharp (Science adjusts theories to fit evidence, creationism distorts evidence to fit the Bible.)
[ Post Reply | Private Reply | To 409 | View Replies]

To: garybob
More plagiarism. Same article as before.

The first, chance formation of life, simply hasn’t been established. It isn’t science, but faith.
The second proposition, that life, having arisen by unknown means, then evolved into the life of today, is more solid. In very old rocks you find fish, then things, like coelacanth and the ichthyostega, that look like transitional forms, and finally us. They seem to have gotten from A to B somehow. A process of evolution, however driven, looks reasonable. It is hard to imagine that they appeared magically from nowhere, one after the other. The third proposition, that the mechanism of evolutions is chance mutation, though sacrosanct among its proponents, is shaky. If it cannot account for the simultaneous appearance of complex, functionally interdependent characteristics, as in the case of caterpillars, it fails. Thus far, it hasn’t accounted for them.

431 posted on 06/01/2005 5:36:12 PM PDT by Right Wing Professor
[ Post Reply | Private Reply | To 231 | View Replies]

To: Right Wing Professor
I guess you have so few ideas of your own, you have to plagiarize other people's. In this case FredOnEverything.

Good work. I'm shocked. Shocked!

432 posted on 06/01/2005 5:37:05 PM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas. The List-O-Links is at my homepage.)
[ Post Reply | Private Reply | To 426 | View Replies]

To: darbymcgill
I'm sure I'll be seeing you post a scathing diatribe to the Professor for so easily dismissing garybob.

You mean, Fred Reed?

You really don't know what plagiarism is?

433 posted on 06/01/2005 5:38:28 PM PDT by Right Wing Professor
[ Post Reply | Private Reply | To 429 | View Replies]

To: PatrickHenry

Piece of cake. When you teach college, unfortunately, you get a lot of practice at this.


434 posted on 06/01/2005 5:39:51 PM PDT by Right Wing Professor
[ Post Reply | Private Reply | To 432 | View Replies]

To: darbymcgill
"I'm sure I'll be seeing you post a scathing diatribe to the Professor for so easily dismissing garybob. I can hardly read these post for all the footnotes...."

I'm supposed to call the Professor out for exposing someone as a plagiarist? I'm going to pass on that one.
435 posted on 06/01/2005 5:40:07 PM PDT by daysailor (Sorry, I'm new here)
[ Post Reply | Private Reply | To 429 | View Replies]

To: PatrickHenry

Evolution is not a theory it is a fact. If so-called 'Superbugs' exist thats all the proof you need.
The shorter the lifespan of the organism the greater its capacity for adaptation. The Bible doesn't address the dinosaurs' existence and evolution can't explain the origin of matter.



436 posted on 06/01/2005 5:46:21 PM PDT by Pipeline (The lessons can be harsh. All are repeated until learned.)
[ Post Reply | Private Reply | To 1 | View Replies]

To: Right Wing Professor

I don't mind telling where I got the information :http://www.fredoneverything.net/EvolutionMonster.shtml

Having said that, refute what Fred wrote. I doubt that you can.


437 posted on 06/01/2005 5:49:22 PM PDT by garybob (More sweat in training, less blood in combat.)
[ Post Reply | Private Reply | To 431 | View Replies]

placemarker


438 posted on 06/01/2005 5:51:48 PM PDT by js1138 (e unum pluribus)
[ Post Reply | Private Reply | To 437 | View Replies]

To: garybob
I don't mind telling where I got the information :http://www.fredoneverything.net/EvolutionMonster.shtml

Yeah, sure, now you've been caught.

439 posted on 06/01/2005 5:57:04 PM PDT by Right Wing Professor
[ Post Reply | Private Reply | To 437 | View Replies]

To: garybob

I gotta say, you are in big trouble if you are going to use Fred On Everything as a basis for your assault on the cornerstone of modern biology.

Surely you understand how some might take that less than seriously, right?

I'm thinking troll. Pretty good one, too.


440 posted on 06/01/2005 5:58:06 PM PDT by daysailor (Sorry, I'm new here)
[ Post Reply | Private Reply | To 437 | View Replies]


Navigation: use the links below to view more comments.
first previous 1-20 ... 401-420421-440441-460 ... 661-673 next last

Disclaimer: Opinions posted on Free Republic are those of the individual posters and do not necessarily represent the opinion of Free Republic or its management. All materials posted herein are protected by copyright law and the exemption for fair use of copyrighted works.

Free Republic
Browse · Search
News/Activism
Topics · Post Article

FreeRepublic, LLC, PO BOX 9771, FRESNO, CA 93794
FreeRepublic.com is powered by software copyright 2000-2008 John Robinson