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Researchers Trace Evolution to Relatively Simple Genetic Changes
Howard Hughes Medical Institute ^ | 25 Narcg 2005 | Staff

Posted on 05/31/2005 12:03:06 PM PDT by PatrickHenry

In a stunning example of evolution at work, scientists have now found that changes in a single gene can produce major changes in the skeletal armor of fish living in the wild.

The surprising results, announced in the March 25, 2005, issue of journal Science, bring new data to long-standing debates about how evolution occurs in natural habitats.

“Our motivation is to try to understand how new animal types evolve in nature,” said molecular geneticist David M. Kingsley, a Howard Hughes Medical Institute investigator at the Stanford University School of Medicine. “People have been interested in whether a few genes are involved, or whether changes in many different genes are required to produce major changes in wild populations.”

The answer, based on new research, is that evolution can occur quickly, with just a few genes changing slightly, allowing newcomers to adapt and populate new and different environments.

In collaboration with zoologist Dolph Schluter, at the University of British Columbia, Vancouver, Canada, and Rick Myers and colleagues at Stanford, Kingsley and graduate student Pamela F. Colosimo focused on a well-studied little fish called the stickleback. The fish — with three bony spines poking up from their backs — live both in the seas and in coastal fresh water habitats all around the northern hemisphere.


Wild populations of stickleback fish have evolved major changes in bony armor styles (shaded) in marine and freshwater environments. New research shows that this evolutionary shift occurs over and over again by increasing the frequency of a rare genetic variant in a single gene.

Sticklebacks are enormously varied, so much so that in the 19th century naturalists had counted about 50 different species. But since then, biologists have realized most populations are recent descendants of marine sticklebacks. Marine fish colonized new freshwater lakes and streams when the last ice age ended 10,000 to 15,000 years ago. Then they evolved along separate paths, each adapting to the unique environments created by large scale climate change.

“There are really dramatic morphological and physiological adaptations” to the new environments, Kingsley said.

For example, “sticklebacks vary in size and color, reproductive behavior, in skeletal morphology, in jaws and teeth, in the ability to tolerate salt and different temperatures at different latitudes,” he said.

Kingsley, Schluter and their co-workers picked one trait — the fish's armor plating — on which to focus intense research, using the armor as a marker to see how evolution occurred. Sticklebacks that still live in the oceans are virtually covered, from head to tail, with bony plates that offer protection. In contrast, some freshwater sticklebacks have evolved to have almost no body armor.

“It's rather like a military decision, to be either heavily armored and slow, or to be lightly armored and fast,” Kingsley said. “Now, in countless lakes and streams around the world these low-armored types have evolved over and over again. It's one of the oldest and most characteristic differences between stickleback forms. It's a dramatic change: a row of 35 armor plates turning into a small handful of plates - or even no plates at all.”

Using genetic crosses between armored and unarmored fish from wild populations, the research team found that one gene is what makes the difference.

“Now, for the first time, we've been able to identify the actual gene that is controlling this trait,” the armor-plating on the stickleback, Kingsley said

The gene they identified is called Eda, originally named after a human genetic disorder associated with the ectodysplasin pathway, an important part of the embryonic development process. The human disorder, one of the earliest ones studied, is called ectodermal dysplasia.

“It's a famous old syndrome,” Kingsley said. “Charles Darwin talked about it. It's a simple Mendelian trait that controls formation of hair, teeth and sweat glands. Darwin talked about `the toothless men of Sind,' a pedigree (in India) that was striking because many of the men were missing their hair, had very few teeth, and couldn't sweat in hot weather. It's a very unusual constellation of symptoms, and is passed as a unit through families.”

Research had already shown that the Eda gene makes a protein, a signaling molecule called ectodermal dysplasin. This molecule is expressed in ectodermal tissue during development and instructs certain cells to form teeth, hair and sweat glands. It also seems to control the shape of - bones in the forehead and nose.

Now, Kingsley said, “it turns out that armor plate patterns in the fish are controlled by the same gene that creates this clinical disease in humans. And this finding is related to the old argument whether Nature can use the same genes and create other traits in other animals.”

Ordinarily, “you wouldn't look at that gene and say it's an obvious candidate for dramatically changing skeletal structures in wild animals that end up completely viable and healthy,' he said. "Eda gene mutations cause a disease in humans, but not in the fish. So this is the first time mutations have been found in this gene that are not associated with a clinical syndrome. Instead, they cause evolution of a new phenotype in natural populations.”

The research with the wild fish also shows that the same gene is used whenever the low armor trait evolves. “We used sequencing studies to compare the molecular basis of this trait across the northern hemisphere,” said Kingsley. “It doesn't matter where we look, on the Pacific coast, the East coast, in Iceland, everywhere. When these fish evolve this low-armored state they are using the same genetic mechanism. It's happening over and over again. It makes them more fit in all these different locations.”

Because this trait evolves so rapidly after ocean fish colonize new environments, he added, “we wondered whether the genetic variant (the mutant gene) that controls this trait might still exist in the ocean fish. So we collected large numbers of ocean fish with complete armor, and we found a very low level of this genetic variant in the marine population.”

So, he said, “the marine fish actually carry the genes for this alternative state, but at such a low level it is never seen;” all the ocean fish remain well-armored. “But they do have this silent gene that allows this alternative form to emerge if the fish colonize a new freshwater location.”

Also, comparing what happens to the ectodysplasin signaling molecule when its gene is mutated in humans, and in fish, shows a major difference. The human protein suffers "a huge amount of molecular lesions, including deletions, mutations, many types of lesions that would inactivate the protein," Kingsley said.

But in contrast, “in the fish we don't see any mutations that would clearly destroy the protein.” There are some very minor changes in many populations, but these changes do not affect key parts of the molecule. In addition, one population in Japan used the same gene to evolve low armor, but has no changes at all in the protein coding region. Instead, Kingsley said, “the mutations that we have found are, we think, in the (gene's) control regions, which turns the gene on and off on cue.” So it seems that evolution of the fish is based on how the Eda gene is used; how, when and where it is activated during embryonic growth.

Also, to be sure they're working with the correct gene, the research team used genetic engineering techniques to insert the armor-controlling gene into fish “that are normally missing their armor plates. And that puts the plates back on the sides of the fish,” Kingsley said.

“So, this is one of the first cases in vertebrates where it's been possible to track down the genetic mechanism that controls a dramatic change in skeletal pattern, a change that occurs naturally in the wild,” he noted.

“And it turns out that the mechanisms are surprisingly simple. Instead of killing the protein (with mutations), you merely adjust the way it is normally regulated. That allows you to make a major change in a particular body region - and produces a new type of body armor without otherwise harming the fish.”


TOPICS: Culture/Society; Miscellaneous; Philosophy
KEYWORDS: crevolist; evolution; genetics; godsgravesglyphs; helixmakemineadouble; massextinction; ordovician; phenryjerkalert; trilobite; trilobites
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To: Old Professer
I'm having a hard time trying to figure out what survival benefit body armor would convey to a 3 inch fish that would normally be swallowed whole by its predators.

There are a lot of defense mechanisms such as exuding poisons that give little or no defense to the individual but will protect the species. It works because it deters predators from making the same mistake twice. I think the way they explain it is that, "An chicken is an egg's way of making another chicken."

101 posted on 05/31/2005 2:14:12 PM PDT by Dan Evans
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To: VadeRetro
Looks like it's time to haul this one out again:



The scientific case against Craterism

1. Meteor craters have not been observed to happen, now or in the past.
2. Meteor craters have never been reproduced in the lab, and are thus not scientific.
3. Thomas Jefferson said: "Gentlemen, I would rather believe that two Yankee professors would lie than believe that stones fall from heaven."
4. The odds against a random rock falling from the sky, striking the earth, and making a crater are astronomical.
5. The second law of thermodynamics prohibits meteor craters.
6. Meteor craters are not mentioned in the bible, nor are "rocks from the sky."
7. Craterism is a product of materialism and a Godless, naturalistic worldview.
8. Belief that rocks can fall from the sky promotes hedonism and amoral, animalistic behavior.
9. Craterism makes no predictions and is untestable; it is therefore not scientific.
10. Craterists can produce micro-craters, but have no evidence of macro-cratering.
11. Aristotle didn't believe in Craterism. Nor did Galileo, Newton, or Einstein.
12. Einstein even said: "God does not play dice!" Are you smarter than Einstein?
13. Scientists are abandoning craterism because they know it is not supported by evidence.
14. Anyone who thinks there are rocks in the sky has rocks in his head.
15. It takes more faith to believe in Craterism than it does to believe in the Tooth Fairy.
16. More and more scientists are turning to "Intelligent Crater" theory (IC). Craterism is a theory in crisis!

102 posted on 05/31/2005 2:14:16 PM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas. The List-O-Links is at my homepage.)
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To: blueblazes
Obviously any real science can be proven.

No, it can't. The best science can do is conclude that our current understanding of a certain phenomenon has not been disproven.

103 posted on 05/31/2005 2:15:45 PM PDT by Modernman ("Laws are like sausages, it is better not to see them being made. " -Bismarck)
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To: blueblazes

You didn't answer my question.

I was referring to gradual change, not to speciation.


104 posted on 05/31/2005 2:15:54 PM PDT by From many - one.
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To: orionblamblam
... and Muhammad is his prophet.

Wrong.

I worship the God of Abraham, Isaac and Jacob...as well as Moses, King David, The Apostle Paul, Sir Isaac Newton, George Washington and Abraham Lincoln, to name a few.

If you don't know the difference between that God, Who the Founders called 'the Creator' in the Declaration of Independence, and Allah, you need to study a bit harder.

105 posted on 05/31/2005 2:16:58 PM PDT by EternalVigilance ("We, the people, are the rightful masters of both Congress and the courts..." -Abraham Lincoln)
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To: blueblazes
I understand that you are deeply disturbed by evolution, but please don't pretend to have the slightest clue about the scientific method. Of course imagination is necessary. A hypothesis is crafted from previous evidence mixed with imagination of how something might work. Evolution has been proven far past the hypothesis level. And evolution takes nothing away from God.

As for Adam and Eve, the story is a parable. The moral of the story is that humans have been given the gift of self-realization, the ability to know we are alive and some day will not be. That realization makes pain worse, and strips us of the dumb happiness of the rest of the animal kingdom. The garden of Eden is not some long vanished spot between the Tigris and Euphrates rivers. The Garden of Eden is where the house cat, fish, and kangaroo live. It's a state of being blissfully unaware that life is going to end.
106 posted on 05/31/2005 2:17:01 PM PDT by mysterio
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To: mysterio
As for Adam and Eve, the story is a parable. The moral of the story is that humans have been given the gift of self-realization, the ability to know we are alive and some day will not be. That realization makes pain worse, and strips us of the dumb happiness of the rest of the animal kingdom. The garden of Eden is not some long vanished spot between the Tigris and Euphrates rivers. The Garden of Eden is where the house cat, fish, and kangaroo live. It's a state of being blissfully unaware that life is going to end.

Are we to take your word on faith?

107 posted on 05/31/2005 2:18:55 PM PDT by EternalVigilance ("We, the people, are the rightful masters of both Congress and the courts..." -Abraham Lincoln)
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To: blueblazes
A shark is a shark is a shark. Those are not different species.

So, all sharks belong to the same species? Interesting.

108 posted on 05/31/2005 2:19:19 PM PDT by Modernman ("Laws are like sausages, it is better not to see them being made. " -Bismarck)
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To: EternalVigilance

No, think it through, and consider the possibility that the passage is not to be taken literally. Jesus spoke in parables. Is it not possible that some Old Testament passages are parables as well?


109 posted on 05/31/2005 2:20:49 PM PDT by mysterio
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To: PatrickHenry
Don't look now, but these scientists have just proved the the theory of evolution is a crock. It should be renamed the theory of gene mutation and a whole new set of assumptions developed to support it's application.
110 posted on 05/31/2005 2:21:04 PM PDT by finnigan2
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To: blueblazes
I don't know. My problem is that we have no proof of what those things are. Just because something "looks" like something else does not mean that one thing came before or after the other or that they are related.

As I thought. You were claiming that no such forms intermediate in form and time existed. We have barrels and buckets of them.

No acknowledgement, no explanation, you're suddenly in the standard fallback trench of "Nobody can prove to me that those things are what I said doesn't exist."

And why would one form NOT have come before or after another even though elementary and low-tech geological principles such as superposition can establish that? Because you're not just an evolution denier, right? You're also prepared to attack radiometric dating, the age of the Earth, non-diluvial geology, and probably astronomy as needed.

This from a guy who says the Bible has nothing to do with his opinions on evolution. There are no secular skeptics of radiometric dating, or geological superposition, never mind all the other stuff. You are so bogus! Pheewww!!! Geddouddahere!

111 posted on 05/31/2005 2:21:14 PM PDT by VadeRetro ( Liberalism is a cancer on society. Creationism is a cancer on conservatism.)
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To: EternalVigilance
There is only one God.

Which one? Brhaman? Zeus? Odin? And how do you know that evolution is an attempt to attack that one particular God out of all others that have been worshipped?
112 posted on 05/31/2005 2:21:21 PM PDT by Dimensio (http://angryflower.com/bobsqu.gif <-- required reading before you use your next apostrophe!)
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To: VadeRetro
But here they aren't using the same names anymore. That means you can play "Guess which banned militant idiot THAT clueless noob is?"

D@mn! I was just about to post that. Shall we start a betting pool before it's too late?

113 posted on 05/31/2005 2:21:45 PM PDT by balrog666 (A myth by any other name is still inane.)
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To: blueblazes
Why didn't sharks evolve?

Is the fact that there are some ancient species alive today an argument for or against evolution? If a missing link isn't found we are asked, "Where is the missing link?" If the link exists, we are asked, "Why didn't it evolve?"

114 posted on 05/31/2005 2:21:54 PM PDT by Dan Evans
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To: PatrickHenry

So, he said, “the marine fish actually carry the genes for this alternative state, but at such a low level it is never seen;” all the ocean fish remain well-armored. “But they do have this silent gene that allows this alternative form to emerge if the fish colonize a new freshwater location.”

Species made to easily adapt to multiple conditions. Isn't that evidence for creation? Were the marine fish carrying around this gene "just-in-case" they happen to bump into some fresh water? How, exactly, does evolution account for ready-to-go premade genes for other environments?


115 posted on 05/31/2005 2:22:10 PM PDT by johnnyb_61820
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To: orionblamblam
There is only one God.

... and Muhammad is his prophet.

Infidel! You stole my line!

116 posted on 05/31/2005 2:22:37 PM PDT by WildHorseCrash
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To: VadeRetro
This from a guy who says the Bible has nothing to do with his opinions on evolution. There are no secular skeptics of radiometric dating, or geological superposition, never mind all the other stuff.

I suppose it could have been the Koran, the Book of Mormon, the Baghavad Gita, or whatever, but it never is.

117 posted on 05/31/2005 2:23:39 PM PDT by VadeRetro ( Liberalism is a cancer on society. Creationism is a cancer on conservatism.)
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To: Dimensio

For your answer, see my post above.

No need for you to be 'clever'. It is quite plain which God I serve...the same Creator that Americans have always worshipped. You can read all about Him in the Bible.


118 posted on 05/31/2005 2:23:57 PM PDT by EternalVigilance ("We, the people, are the rightful masters of both Congress and the courts..." -Abraham Lincoln)
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To: EternalVigilance
It is quite plain which God I serve...the same Creator that Americans have always worshipped.

Manitou?

119 posted on 05/31/2005 2:25:33 PM PDT by Modernman ("Laws are like sausages, it is better not to see them being made. " -Bismarck)
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To: Dan Evans

Maybe.


120 posted on 05/31/2005 2:26:10 PM PDT by Old Professer (As darkness is the absence of light, evil is the absence of good; innocence is blind.)
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