Free Republic
Browse · Search
News/Activism
Topics · Post Article

Skip to comments.

Testing Darwin
Carl Zimmer ^

Posted on 02/14/2005 1:50:46 AM PST by mc6809e

After more than a decade of development, Avida's digital organisms are now getting close to fulfilling the definition of biological life. “More and more of the features that biologists have said were necessary for life we can check off,” says Robert Pennock, a philosopher at Michigan State and a member of the Avida team. “Does this, does that, does this. Metabolism? Maybe not quite yet, but getting pretty close.”

[snip]

The researchers set up an experiment to document how one particularly complex operation evolved. The operation, known as equals, consists of comparing pairs of binary numbers, bit by bit, and recording whether each pair of digits is the same. It's a standard operation found in software, but it's not a simple one. The shortest equals program Ofria could write is 19 lines long. The chances that random mutations alone could produce it are about one in a thousand trillion trillion.

To test Darwin's idea that complex systems evolve from simpler precursors, the Avida team set up rewards for simpler operations and bigger rewards for more complex ones. The researchers set up an experiment in which organisms replicate for 16,000generations. They then repeated the experiment 50 times.

Avida beat the odds. In 23 of the 50 trials, evolution produced organisms that could carry out the equals operation. And when the researchers took away rewards for simpler operations, the organisms never evolved an equals program. “When we looked at the 23 tests, they were all done in completely different ways,” adds Ofria. He was reminded of how Darwin pointed out that many evolutionary paths can produce the same complex organ.

(Excerpt) Read more at carlzimmer.com ...


TOPICS: Culture/Society; Philosophy
KEYWORDS: crevolist; culture; darwin; evolution; philosophy; science
Navigation: use the links below to view more comments.
first 1-2021-4041-6061-70 next last

1 posted on 02/14/2005 1:50:46 AM PST by mc6809e
[ Post Reply | Private Reply | View Replies]

To: mc6809e
It took a while for Ofria to realize that they had tricked him.
They had evolved a way to tell when Ofria was testing them by looking at the numbers he fed them.
As soon as they recognized they were being tested, they stopped processing numbers.
“If it was a test environment, they said, 'Let's play dead,' ” says Ofria.
“There's this thing coming to kill them, and so they avoid it and go on with their lives.”

If they can recognize a threat and adapt a responce to it, one would think they can recognize an attempt to communicate and adapt a responce.. Like communication..
This could be an incredible advance in the Artificial Intelligence field..
Evolving AI rather than writing a program to "emulate" intelligence..

2 posted on 02/14/2005 3:22:41 AM PST by Drammach (Freedom; not just a job, it's an adventure..)
[ Post Reply | Private Reply | To 1 | View Replies]

To: mc6809e

More proof that, given an energy source, simple rules can lead to complex organization. This is ultimately the revolutionary thought that Darwin put forward, and what "creationists" seek to discredit, even though it says nothing about the origin of the conditions necessary for the energy flow.


3 posted on 02/14/2005 3:23:00 AM PST by marktwain
[ Post Reply | Private Reply | To 1 | View Replies]

To: Drammach

Ofria is getting awfully romantic about the fact that his progam isn't working the way he thought it would. If that's the definition of AI, then Microsoft gave birth years ago.


4 posted on 02/14/2005 3:25:52 AM PST by samtheman
[ Post Reply | Private Reply | To 2 | View Replies]

To: PatrickHenry

Ping.


5 posted on 02/14/2005 3:29:30 AM PST by Junior (FABRICATI DIEM, PVNC)
[ Post Reply | Private Reply | To 1 | View Replies]

To: mc6809e

very interesting. bump for later reading.


6 posted on 02/14/2005 3:31:00 AM PST by ladyrustic (seek Truth, Beauty, and Goodness)
[ Post Reply | Private Reply | To 1 | View Replies]

To: mc6809e
This is a link to Discover Magaazine. This article is their cover story. But without a subscription you can only see the first few paragraphs:
Testing Darwin: Digital organisms that breed thousands of times faster than common bacteria are beginning to shed light on some of the biggest unanswered questions of evolution.
7 posted on 02/14/2005 3:31:17 AM PST by PatrickHenry (<-- Click on my name. The List-O-Links for evolution threads is at my freeper homepage.)
[ Post Reply | Private Reply | To 1 | View Replies]

To: VadeRetro; Junior; longshadow; RadioAstronomer; Doctor Stochastic; js1138; Shryke; RightWhale; ...
EvolutionPing
A pro-evolution science list with over 230 names. See list's description at my homepage. FReepmail to be added/dropped.

8 posted on 02/14/2005 3:33:10 AM PST by PatrickHenry (<-- Click on my name. The List-O-Links for evolution threads is at my freeper homepage.)
[ Post Reply | Private Reply | To 7 | View Replies]

To: samtheman
If that's the definition of AI, then Microsoft gave birth years ago.

Nope.. That's the definition of adaptation..
I merely suggested it could be applied to AI..

9 posted on 02/14/2005 3:41:55 AM PST by Drammach (Freedom; not just a job, it's an adventure..)
[ Post Reply | Private Reply | To 4 | View Replies]

To: Drammach

This project seems more like an elaborate computer game than anything else.


10 posted on 02/14/2005 3:52:28 AM PST by samtheman
[ Post Reply | Private Reply | To 9 | View Replies]

To: marktwain
More proof that, given an energy source, simple rules can lead to complex organization.

I think the experiment also suggests a response to the irreducible complexity argument.

In these simulated organisms, non functioning (by some standard) "genes" continue to propagate with the organism even though they don't serve a purpose (or even hinder the organism to some degree). Then at some point a random mutation adds the last piece of the puzzle and the collection of genes now collectively serves to help the organism.

Implicit in the irreducible complexity argument is that these nonfunctional genes prevent the organism from surviving all together so that later generations cannot build on them. But that of course is not true. Our DNA is full of genetic garbage. Well, it may be garbage now, but maybe a mutation in the future will make those genes useful to us.

Even genes that tend to harmful to our progress may stick around long enough to become useful later.

There are plenty of genetic diseases that sustain themselves through families for example. It's possible that one day favorable mutations will turn these genes into something favorable later on.

Consider the mouse trap example. It's claimed that the mouse trap is irreducibly complex. It may be. That's fine. It doesn't hurt the argument for evolution.

The answer is that organisms already contain the equivalent of incomplete mouse traps in their DNA. Right now these incomplete devices are waiting for the last mutation to make them complete.

11 posted on 02/14/2005 3:55:54 AM PST by mc6809e
[ Post Reply | Private Reply | To 3 | View Replies]

To: samtheman
This project seems more like an elaborate computer game than anything else.

Then you don't understand t.

12 posted on 02/14/2005 3:57:01 AM PST by Ichneumon
[ Post Reply | Private Reply | To 10 | View Replies]

To: PatrickHenry
The Discover link and the Zimmer.com link are the same article as far as I can tell.. ( Same links at Devolab )

For anyone interested, here's link to Avida program download page..and the "Sourceforge" download link..

Avida sofware page

Sourceforge/Avida download link

You can run the program yourself, on your own computer..

13 posted on 02/14/2005 3:57:02 AM PST by Drammach (Freedom; not just a job, it's an adventure..)
[ Post Reply | Private Reply | To 7 | View Replies]

To: Ichneumon; samtheman

Here's link to page describing background of the Avida program.. Longer than the article in this posting, and maybe more informative..

http://devolab.cse.msu.edu/software/avida/background.php


14 posted on 02/14/2005 4:05:25 AM PST by Drammach (Freedom; not just a job, it's an adventure..)
[ Post Reply | Private Reply | To 12 | View Replies]

To: All

I learned to be skeptical of computer 'evidence' for Darwin ever since the 'methinksitsaweazel' program offered by Dawkins some years ago.

If that is evidence for The Theory, then global warming is real.

Omar.


15 posted on 02/14/2005 4:34:12 AM PST by bzrd
[ Post Reply | Private Reply | To 14 | View Replies]

To: samtheman
"This project seems more like an elaborate computer game than anything else."

As I understand it, game theory can be applied to everything.

16 posted on 02/14/2005 5:37:14 AM PST by DaGman
[ Post Reply | Private Reply | To 10 | View Replies]

To: mc6809e
Yeah, right, Intelligent humans, using the best known devices designed by humans, in an orderly manner, create a test which included the use of inteligent designed machines using the latest technology...

to try and prove it all happened by chance.


17 posted on 02/14/2005 6:23:07 AM PST by RaceBannon ((Prov 28:1 KJV) The wicked flee when no man pursueth: but the righteous are bold as a lion.)
[ Post Reply | Private Reply | To 1 | View Replies]

To: RaceBannon

The point of this experiment was not to disprove the existence of God, as you seem to feel.

It was designed to investigate genetic inheritance, and evolutionary pressures; to see if some of the micro-evolution we see in nature (like butterflys changing color after several generations to camoflage themselves in a new environment) could be replicated using computers. This allows millions of "generations" to be studied in a short period of time.

The results of such experiments are not pre-ordained: In the end, it is scientific experimentation that will either disprove Darwin's theory (which I happen to believe), or support its validity.

Remember how the Church forced Galileo to recant on his knees his sun-centered universe under pain of death, because scripture was crystal clear to them:Psalm 19: 4-6 says "the sun comes forth like a groom from his bridal chamber and ... joyfully runs its course; or Ecclesiastes 1:5: "the sun rises, the sun sets; then to its place it speeds and there it rises [again]"; or Joshua 10:12-13: "Joshua declared, 'Sun, stand still over Gibeon, and, Moon, you also, over the Vale of Aijalon.' And the sun stood still, and the moon halted till the people had vengeance on their enemies." Or Psalm 104:5: "You fixed the earth on its foundations, unshakeable for ever and ever."

The priests cited these verses in their condemnation of Galileo. See, they said, the earth does not move, it says so in scripture. But they were wrong.

And Galileo had no hidden, God-hating agenda. He was simply using his God-given intellect and curiosity to make discoveries about the world.

I believe most scientists today, like Galileo, work because they are curious and want to understand the functioning of the universe. They have no malicious motives, and should not be looked at with such utter distrust by creationists.


18 posted on 02/14/2005 7:30:24 AM PST by ladyrustic (seek Truth, Beauty, and Goodness)
[ Post Reply | Private Reply | To 17 | View Replies]

To: ladyrustic; RaceBannon
The priests cited these verses in their condemnation of Galileo. See, they said, the earth does not move, it says so in scripture. But they were wrong.

And they burned Bruno, who presumed to assert that the stars might be suns like our own, and have planets round them. They used scriptural authority to justify that, too. They thought that the Bible was quite clear on the earth being the stationary centre of the universe, just as modern protestant fundamentalists think the Bible is quite clear that the universe is 6000 years old and evolution didn't happen.

19 posted on 02/14/2005 7:36:21 AM PST by Thatcherite (Conservative and Biblical Literalist are not synonymous)
[ Post Reply | Private Reply | To 18 | View Replies]

To: Thatcherite

The Bible never said those thigns, so, Dont blame The Bible on the errors of unbelievers in what the Bible says


20 posted on 02/14/2005 7:43:16 AM PST by RaceBannon ((Prov 28:1 KJV) The wicked flee when no man pursueth: but the righteous are bold as a lion.)
[ Post Reply | Private Reply | To 19 | View Replies]


Navigation: use the links below to view more comments.
first 1-2021-4041-6061-70 next last

Disclaimer: Opinions posted on Free Republic are those of the individual posters and do not necessarily represent the opinion of Free Republic or its management. All materials posted herein are protected by copyright law and the exemption for fair use of copyrighted works.

Free Republic
Browse · Search
News/Activism
Topics · Post Article

FreeRepublic, LLC, PO BOX 9771, FRESNO, CA 93794
FreeRepublic.com is powered by software copyright 2000-2008 John Robinson