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Life’s irreducible structure—Part 1: autopoiesis (ID and the Evos make big mistake?)
Journal of Creation ^ | Alex Williams

Posted on 08/08/2008 9:26:41 AM PDT by GodGunsGuts

The commonly cited case for intelligent design appeals to: (a) the irreducible complexity of (b) some aspects of life. But complex arguments invite complex refutations (valid or otherwise), and the claim that only some aspects of life are irreducibly complex implies that others are not, and so the average person remains unconvinced. Here I use another principle autopoiesis (self-making)-—to show that all aspects of life lie beyond the reach of naturalistic explanations...

(Excerpt) Read more at creationontheweb.com ...


TOPICS: Culture/Society; Government; Philosophy
KEYWORDS: anothercrevothread; behe; creation; crevo; evolution; intelligentdesign; wrongforum
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To: GodGunsGuts
The question I have, if you posit multiple creators, then how do you explain the harmony of the laws that govern nature?

Harmonious creators?

Why should there be different laws governing the universe? The entity known as the universe governs everything else within it, including all matter and energy, and whatever forms of intelligence may exist. Whatever other sub-intelligence exists within the highest of intelligences, i.e., the universe, is governed by the laws set down by that highest universal intelligence.


101 posted on 08/08/2008 5:55:47 PM PDT by adorno
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To: GodGunsGuts
Thank you kindly for the ping. I'm sure I would have missed the article and discussion otherwise.

'Late arriving here, read through the comments, saved a copy of the PDF for later reading. Didn't even skim through it yet...gotta go...

102 posted on 08/08/2008 9:04:25 PM PDT by BlueDragon
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To: Coyoteman
The problem we see so far is that the evidence they bring gets disproved but the creationists still cling to it as if it supported their case. Irreducible complexity is one example;

I thought that IC was not supposed to be science because it couldn't be falsified. Which is it?

Cordially,

103 posted on 08/11/2008 8:45:14 AM PDT by Diamond
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To: Diamond
I thought that IC was not supposed to be science because it couldn't be falsified. Which is it?

There is no theory to falsify.

There are various claims made which have turned out not to be true. That is a long way from having a robust scientific theory which is falsified by new information.

You could claim that fire burns cold, and that claim could be falsified, but that does not make the "fire burns cold" idea a scientific theory. It is simply an idea, a claim, that can be tested. The irreducible complexity idea was along those lines. That is a simple question that could be addressed scientifically, and in fact one which has been falsified.

The central claim in ID is that there is a supernatural IDer. That can't be tested scientifically. (I know, they refuse to name the IDer, but is there any doubt that ID is all about the fundamentalist view of the Christian deity despite all the denials the IDers come up with?)

104 posted on 08/11/2008 8:53:46 AM PDT by Coyoteman (Religious belief does not constitute scientific evidence, nor does it convey scientific knowledge.)
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To: exDemMom
The amount of non-functional DNA in cells is huge.

Does having a subscription to Science and Journal of Biological Chemistry count?

Perhaps you missed this: "The ENCODE consortium's major findings include the discovery that the majority of DNA in the human genome is transcribed into functional molecules..."

105 posted on 08/11/2008 9:13:45 AM PDT by dan1123 (If you want to find a person's true religion, ask them what makes them a "good person".)
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To: Coyoteman
There is no theory to falsify.

Then how did IC make it past the peer review filter into the scientific literature as a new classification, developed by two critics of ID attempting to formulate possible Darwinian routes of IC? The article is:

Thornhill, R.H., Ussery, D.W. 2000. "A classification of possible routes of Darwinian evolution." J. Theor. Bio. 203: 111-116.

You can't tell me that the above article would have ever been written had these IC structures already been explained by science, a fact that constitutes indirect evidence vindictating Behe's original claim about the state of the science.

Cordially,

106 posted on 08/11/2008 9:23:14 AM PDT by Diamond
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To: Diamond
The Flagellum Unspun: The Collapse of "Irreducible Complexity," by Kenneth R. Miller
107 posted on 08/11/2008 9:40:07 AM PDT by Coyoteman (Religious belief does not constitute scientific evidence, nor does it convey scientific knowledge.)
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To: Coyoteman; Diamond

That article hardly ‘unspins the Falgellum’ nor does it ‘collapse Irreducible Complexity’.

That article is about as weak as your ‘Unintelligent Non-design Suffices’ video.

You might as well include your disguised talkorigin links.


108 posted on 08/11/2008 10:28:51 AM PDT by valkyry1
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To: Coyoteman
The Flagellum Unspun: The Collapse of "Irreducible Complexity," by Kenneth R. Miller

What's funny about Miller's article is that the very paper he cites in support of his claims that a number of detailed rebuttals of IC had appeared in the literature, and that "the scientific literature containes counter-examples to any assertion that evolution cannot explain biochemical complexity", is explicitly contradicted by Thornhill and Ussery themselves in their paper!

This is Miller's brief reference to the Thornhill and Ussery paper:

The assertion that cellular machines are irreducibly complex, and therefore provide proof of design, has not gone unnoticed by the scientific community. A number of detailed rebuttals have appeared in the literature, and many have pointed out the poor reasoning of recasting the classic argument from design in the modern language of biochemistry (Coyne 1996; Miller 1996; Depew 1998; Thornhill and Ussery 2000). I have suggested elsewhere that the scientific literature contains counter-examples to any assertion that evolution cannot explain biochemical complexity (Miller 1999, 147), and other workers have addressed the issue of how evolutionary mechanisms allow biological systems to increase in information content (Schneider 2000; Adami, Ofria, and Collier 2000).

This is what Thornhill and Ussery had to say in their paper, though:

""However, the more theoretical question about the accessibility by Darwinian evolution of irreducibly complex structures of functionally indivisible components, if such exist, has not been thoroughly examined. ….One factor hampering examination of the accessibility of biological structures by Darwinian evolution is the absence of a classification of possible routes. A suggested classification is presented here."
[emphasis mine]

Further, they write,

2. Classification.

Possible routes of Darwinian evolution can be classified into four fundamental categories, as outlined below.


(a) Serial direct Darwinian evolution. This means change along a single axis. Although it can generate complicated structures, it cannot generate irreducibly complex structures."
[emphasis mine]

Cordially,

109 posted on 08/11/2008 10:35:56 AM PDT by Diamond
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To: Coyoteman
The link for the Thornhill, Ussery paper is:

: Thornhill, R.H., Ussery, D.W. 2000. "A classification of possible routes of Darwinian evolution." J. Theor. Bio. 203: 111-116.

Cordially,

110 posted on 08/11/2008 10:38:54 AM PDT by Diamond
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To: Diamond
Here is the larger quote, with the small section you quoted in bold. What was left out of what you quoted above alters the meaning:

It was recently suggested that many biological structures are irreducibly complex, and therefore inaccessible by Darwinian evolution. Thus far, this is merely a restatement of the (fallacious) popular creationist argument about organs such as the eye. However, the new departure was to argue that the components of biochemical systems, unlike those of supramolecular structures, are single molecules, which are often functionally indivisible. The conclusion was that irreducibly complex structures of functionally indivisible components are inaccessible by Darwinian evolution. Eukaryotic undulipodia (cilia and flagella), bacterial flagella, intracellular vesicular transport, and the mammalian immune response and blood-clotting systems were given as examples (Behe, 1996a).

The above thesis is unsound, as it is not certain either that any biological structures are irreducibly complex, or that their component molecules are functionally indivisible (Coyne, 1996; Doolittle, 1997; Fulton, 1997; Ussery, 1999). However, the more theoretical question about the accessibility by Darwinian evolution of irreducibly complex structures of functionally indivisible components, if such exist, has not been thoroughly examined. One suggested mechanism for the evolution of such structures is the addition of advantageous but inessential components which become essential later as a result of the addition of further, interlocking, components (Orr, 1996). However, this could only produce a complex, rather than an irreducibly complex, structure.

One factor hampering examination of the accessibility of biological structures by Darwinian evolution is the absence of a classification of possible routes. A suggested classification is presented here.

The article did not support Behe's ideas regarding irreducible complexity. Rather, the article was a denunciation of Behe. It repudiated Behe's claims about the state of the science.

But through the wonders of quote mining it can be made to say the opposite! Isn't creation "science" wonderful?

111 posted on 08/11/2008 11:32:41 AM PDT by Coyoteman (Religious belief does not constitute scientific evidence, nor does it convey scientific knowledge.)
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To: Coyoteman
The article did not support Behe's ideas regarding irreducible complexity. Rather, the article was a denunciation of Behe. It repudiated Behe's claims about the state of the science.

But through the wonders of quote mining it can be made to say the opposite! Isn't creation "science" wonderful?

In the first place I never said or claimed that Thornhill and Ussery supported Behe's ideas regarding irreducible complexity. In fact I said just the opposite by previously noting that Thornhill and Ussery were critics of ID. That straw man having thus been disposed of, the fact that they do not agree with Behe is obvious, but it does not alter the fact that they explicitly acknowledge that the "theoretical question about the accessibility by Darwinian evolution of irreducibly complex structures of functionally indivisible components, if such exist, has not been thoroughly examined." How you can interpret that statement as indicative of something not to date examined as nevertheless having been thoroughly refuted, and further to respresent such an absurdity as respresenting the state of the science, is beyond me.

If the Darwinian evolution of irreducibly complex structures of functionally indivisible components had indeed been thoroughly examined, which is apparently what you want it to say, they wouldn't have written the paper in the first place, they wouldn't have devised theoretical classifications for Darwinian pathways, and they wouldn't have written that it had not been thoroughly examined. I would like to know therefore, by what strictures of hermeneutic principle you conclude that my representation of the plain meaning is the opposite of what they intended. And by the way, the citation is from a peer reviewed paper, not an Internet article by Kenneth Miller, which is all you cited in rebuttal.

Cordially,

112 posted on 08/11/2008 12:22:24 PM PDT by Diamond
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To: Coyoteman

Which names?


113 posted on 08/11/2008 1:26:34 PM PDT by <1/1,000,000th%
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To: dan1123
Perhaps you missed this: "The ENCODE consortium's major findings include the discovery that the majority of DNA in the human genome is transcribed into functional molecules..."

Please cite the source for that statement. I did not see any such thing while skimming over the ENCODE website.

Such a finding would turn everything we've discovered about the genome in the last 50 years on its head. Not to mention that it would invalidate a number of Nobel prizes. Even within genes that code for proteins, the actual amount of genetic material that codes for the protein itself is very small, maybe 10% or less of the total gene. Most of that extra genetic material is found in the form of regulatory elements, "filler" DNA that separates the regulatory elements, and introns that separate sections of the coding region from each other. None of that extra DNA codes for anything. The genes themselves (with all their extra DNA) only fill up a fraction of a chromosome. I'm not going to discuss every kind of extra DNA, but that's just one example of it.

114 posted on 08/11/2008 4:38:18 PM PDT by exDemMom (Now that I've finally accepted that I'm living a bad hair life, I'm more at peace with the world.)
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To: exDemMom
Please cite the source for that statement. I did not see any such thing while skimming over the ENCODE website.

"However, we also uncovered some surprises that challenge the current dogma on biological mechanisms. The generation of numerous intercalated transcripts spanning the majority of the genome has been repeatedly suggested[13,14], but this phenomenon has been met with mixed opinions about the biological importance of these transcripts. Our analyses of numerous orthogonal data sets firmly establish the presence of these transcripts, and thus the simple view of the genome as having a defined set of isolated loci transcribed independently does not seem to be accurate. Perhaps the genome encodes a network of transcripts, many of which are linked to protein-coding transcripts and to the majority of which we cannot (yet) assign a biological role." here

115 posted on 08/11/2008 5:19:26 PM PDT by dan1123 (If you want to find a person's true religion, ask them what makes them a "good person".)
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To: dan1123; exDemMom

Another interesting quote from the Nature article:

“At the outset of the ENCODE Project, many believed that the
broad collection of experimental data would nicely dovetail with
the detailed evolutionary information derived from comparing multiple
mammalian sequences to provide a neat ‘dictionary’ of conserved
genomic elements, each with a growing annotation about
their biochemical function(s). In one sense, this was achieved; the
majority of constrained bases in the ENCODE regions are now associated
with at least some experimentally derived information about
function. However, we have also encountered a remarkable excess of
experimentally identified functional elements lacking evolutionary
constraint, and these cannot be dismissed for technical reasons. This
is perhaps the biggest surprise of the pilot phase of the ENCODE
Project, and suggests that we take a more ‘neutral’ view of many of the
functions conferred by the genome.”


116 posted on 08/11/2008 5:34:21 PM PDT by dan1123 (If you want to find a person's true religion, ask them what makes them a "good person".)
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To: GodGunsGuts
From Saint Augustine's "The Literal Meaning of Genesis," Chapter 19,

Reckless and incompetent expounders of Holy Scripture bring untold trouble and sorrow on their wiser brethren when they are caught in one of their mischievous false opinions and are taken to task by those who are not bound by the authority of our sacred books. For then, to defend their utterly foolish and obviously untrue statements, they will try to call upon Holy Scripture for proof and even recite from memory many passages which they think support their position, although "they understand neither what they say nor the things about which they make assertions".

"Securus judicat orbis terrarium."

117 posted on 08/12/2008 8:32:17 AM PDT by <1/1,000,000th%
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To: <1/1,000,000th%
From Martin Luther, Lectures on Genesis,

"We assert that Moses spoke in the literal sense, not allegorically or figuratively, i.e., that the world, with all its creatures, was created within six days, as the words read."

118 posted on 08/12/2008 8:44:39 AM PDT by GodGunsGuts
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To: GodGunsGuts
Except that Luther couldn't read Hebrew and admitted as much.

"The Hebrew language is the best language of all, with the richest vocabulary... If I were younger I would want to learn this language, because no one can really understand the Scriptures without it. For although the New Testament is written in Greek, it is full of hebraisms and Hebrew expressions. It has therefore been aptly said that the Hebrews drink from the spring, the Greeks from the stream that flows from it, and the Latins from a downstream puddle."

119 posted on 08/12/2008 12:20:16 PM PDT by <1/1,000,000th%
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To: <1/1,000,000th%

==Except that Luther couldn’t read Hebrew and admitted as much.

Wrong:

http://www.glaird.com/luth-heb.htm

Indeed, Augustine objected to translating the Old Testament books from the original Hebrew because he believed the Septuagint “enjoys the weightiest authority.”

http://books.google.com/books?id=NAw0HbMG-hIC&pg=PA387&lpg=PA387&dq=augustine+hebrew&source=web&ots=kVMZILN8bO&sig=-nBWR3B_-xpqbYWpfwZJxniajks&hl=en&sa=X&oi=book_result&resnum=5&ct=result


120 posted on 08/12/2008 12:51:21 PM PDT by GodGunsGuts
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