You cannot award an out at second base if the infielder missed tagging the base.
In this circumstance you could award an out at first, IF the play was deemed over the top. It wasn’t.
This type of play would never result in a double play being awarded.
Here’s a situation where that ruling could come into play.
With a runner on first, a ball is hit to the second baseman. The second baseman trying to field the ball in the base path, is bolled over by the runner, who either winds up on second or does not make it to the bag.
Making contact with the fielder is interference, and a double play could certainly be awarded.
Read the rule. There’s no requirement in an interference call that you tag the base if you’re being interfered with.
The phantom tag of second base during a double play is not a challengeable call. The play would not be reviewable if the Mets had turned a double play and should not have been reviewed here.