With the destruction of the 2nd temple, the sects that relied on the temple, the sacrifices and the priests (Cohens) were destroyed as their very core was destroyed. This was reinforced with the Bar kochkba revolt where Judaic peoples slaughtered the pagan gentiles in Cyrene and Cyprus - thereby bringing the wrath of the Romaoi Empire on themselves and getting themselves banned from their Holy Land
2nd temple Judaism died in 69 AD and it was succeeded by 3 sects - or daughter religions
The Sadduccee and Essene sects died out
Net-net -> Christianity and Modern-day Judaism are sister religions both arising out of 2nd Temple Judaism. In fact the Jewish canon was closed well into the Christian era at the Council of Jamnia where Christocentric texts were edited out.
None of this justifies in any way any kind of persecution of one by the other.