The Nunes/HPSCI memo contained references to information that was never used in Mueller's investigation (I would assume this was the case because FISA surveillance materials would almost certainly be considered inadmissible in court), but may have huge ramifications for Flynn's sentencing or even his guilt.
Flynn probably now has all the legal standing he needs to get his hands on any FISA warrants, surveillance materials, etc. related to him.
His legal team might even serve the subpoena on the House intelligence committee in addition to Mueller.
I'm sure Rep. Nunes would be all to happy to comply with any demands for documents related to the FISA surveillance of Trump campaign team members.