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Creating first synthetic life form
The Globe and Mail ^ | 12/19/05 | CAROLYN ABRAHAM

Posted on 12/19/2005 1:28:07 PM PST by doc30

Work on the world's first human-made species is well under way at a research complex in Rockville, Md., and scientists in Canada have been quietly conducting experiments to help bring such a creature to life.

Robert Holt, head of sequencing for the Genome Science Centre at the University of British Columbia, is leading efforts at his Vancouver lab to play a key role in the production of the first synthetic life form -- a microbe made from scratch.

The project is being spearheaded by U.S. scientist Craig Venter, who gained fame in his former job as head of Celera Genomics, which completed a privately-owned map of the human genome in 2000.

Dr. Venter, 59, has since shifted his focus from determining the chemical sequences that encode life to trying to design and build it: "We're going from reading to writing the genetic code," he said in an interview.

The work is an extreme example of a burgeoning new field in science known as synthetic biology. It relies on advances in computer technology that permit the easy assembly of the chemical bits, known as nucleotides, that make up DNA.

Several scientific groups are trying to make genes that do not exist in nature, in hopes of constructing microbes that perform useful tasks, such as producing industrial chemicals, clean energy or drugs. Dr. Venter and his colleagues are pushing the technology to its limits by trying to put together an entirely synthetic genome.

"We have these genetic codes that we have been determining, so part of the proof [that they encode an organism] is reproducing the chromosome and seeing if it produces the same result," he said.

Government and scientific bodies in the U.S. have investigated safeguards for the new technology, given its potential to yield new pathogens as weapons of bioterror. Ethicists have raised concerns about humans altering the "nature of nature."

But proponents feel the many benefits of redesigning micro-organisms to do human bidding far outweigh the risks.

The Venter team is starting small, working to construct a simpler version of the bacteria known as Mycoplasma genitalium, a common resident of the human reproductive tract. They hope to determine the minimum number of genes required to breathe life into an organism.

M. genitalium is a single-cell bacterium with just one chromosome and 517 genes. But the Venter team is paring the recipe down and believes their version will be able to survive with as few as 250 to 400 genes -- each of which they are making themselves, one chemical piece at a time.

"I grew up doing that with cars and clocks and radios and things like that," Dr. Venter said. "You take them apart to understand them and then you try and see if you can reassemble them."

But even if the team can assemble all of the bug's 500,000 DNA chemicals (roughly 35,000 has been the record so far), no one knows if the organism will be viable. Will simply synthesizing a chemical sequence spark life?

"Nobody has ever done it before so absolutely it is a key hurdle," Dr. Venter said.

Dr. Holt, a Vancouver native who worked in the United States with Dr. Venter until 2002, described it as a "chicken and egg" problem.

"You need an egg to make the chicken, but you also need the chicken to make the egg," Dr. Holt said.

"So the profound problem is what do you do with this DNA once you get it? How do you turn it into an actual organism? You need the genome to encode and make the organism.

"But the way biology works, you need the organism to make the genome."

Dr. Holt and his UBC group are tackling that very problem.

One option for sparking life in a lab-made genome, he explained, is to transplant the synthetic DNA into the shell of an existing microbe. But unlike a human cell, the genetic material of bacteria is not neatly contained in one nucleus that can be removed and simply replaced with another.

"Their chromosomal DNA is floating throughout the entire organism," Dr. Holt said.

So the Vancouver group is researching the use of high-voltage electricity to essentially zap open a host bacteria and slowly infuse it with small pieces of new DNA.

No method exists to insert large DNA fragments. The UBC experiment involves breaking down the DNA of Haemophilus bacteria, a bug common to the upper respiratory tract, into 19 separate pieces and inserting it into the shell of an E. coli, commonly found in the human gut.

"That's the strategy, though we don't know if it will work," Dr. Holt said.

"I thought this was one of the most important problems and one that we should get working on here."

The problem, Dr. Venter said, is worth solving first with bacteria.

Having launched a company called Synthetic Genomics, Dr. Venter believes "the whole world is open" in terms of the commercial applications of being able to build or redesign micro-organisms for specific tasks.

He insists the main goal of his project to build the first synthetic life form, however, is to understand the essence of life, how it evolved and the essential elements that sustain it.

"Here we are trying to understand the human genome with 24,000 some odd genes and 100 trillion cells and we don't know how 300 or 400 genes work together to yield a simple living cell," he said.

"So if we ever have any hope of understanding our own genome, we need to start with something we can actually tear apart, break down and rebuild. So we're starting with a four-cylinder engine instead of a space shuttle."


TOPICS: Culture/Society
KEYWORDS: artificiallife; biology; crevolist; science
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1 posted on 12/19/2005 1:28:08 PM PST by doc30
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To: PatrickHenry

science ping for you.


2 posted on 12/19/2005 1:28:41 PM PST by doc30 (Democrats are to morals what and Etch-A-Sketch is to Art.)
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To: doc30

Ahhhh... to be like God. Then the world will worship me...ME...ME!!!


3 posted on 12/19/2005 1:28:59 PM PST by Paloma_55 (Which part of "Common Sense" do you not understand???)
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To: doc30
This is a false claim...there have been Barbie dolls around for a long time and they were an earlier synthetic life form.
4 posted on 12/19/2005 1:30:23 PM PST by highlander_UW (I don't know what my future holds, but I know Who holds my future)
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To: Paloma_55

Or, in this case, an artificial bacterium...


5 posted on 12/19/2005 1:30:33 PM PST by doc30 (Democrats are to morals what and Etch-A-Sketch is to Art.)
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To: doc30

Dr. Frankenstein, please call your office.


6 posted on 12/19/2005 1:30:41 PM PST by ladtx ("It is fatal to enter any war without the will to win it." -- -- General Douglas MacArthur)
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To: doc30
They hope to determine the minimum number of genes required to breathe life into an organism.
Sounds like they're aware of Michael Behe's thoughts on irreducible complexity to me.

7 posted on 12/19/2005 1:31:18 PM PST by DallasMike (Call me Dallasaurus)
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To: doc30
Dr. Venter, 59, has since shifted his focus from determining the chemical sequences that encode life to trying to design and build it

Actually Venter is still doing a lot of sequencing. He's beeen sampling ocean waters all over the world and doing shotgun sequencing on the bio-organisms found.

8 posted on 12/19/2005 1:32:44 PM PST by tallhappy (Juntos Podemos!)
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To: doc30
...a microbe made from scratch.

Then we'll find out what happens when life ends too.

Don't hold your breath.

9 posted on 12/19/2005 1:34:08 PM PST by onedoug
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To: doc30
It would appear that intelligent designers can create life forms.
10 posted on 12/19/2005 1:35:26 PM PST by USFRIENDINVICTORIA (")
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To: doc30

As in inflatable??????


11 posted on 12/19/2005 1:36:33 PM PST by showme_the_Glory (No more rhyming, and I mean it! ..Anybody got a peanut.....)
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To: doc30
M. genitalium?

I bet this bacterium gets nothing but snickers at microbe cocktail parties.
12 posted on 12/19/2005 1:37:16 PM PST by CzarNicky (The problem with bad ideas is that they seemed like good ideas at the time.)
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To: doc30

The funny part will be when certain persons claim that our ability to design life proves naturalistic evolution.


13 posted on 12/19/2005 1:38:25 PM PST by Buggman (L'chaim b'Yeshua HaMashiach!)
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To: CzarNicky
M. genitalium? I bet this bacterium gets nothing but snickers at microbe cocktail parties.

Actually, it gets applause. Or more precisely, the clap.

14 posted on 12/19/2005 1:39:36 PM PST by Right Wing Professor (Liberals have hijacked science for long enough. Now it's our turn -- Tom Bethell)
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To: USFRIENDINVICTORIA

"But the way biology works, you need the organism to make the genome."

Hmmm. Exactly what creationists have been endlessly pointing out.

But of course, intelligent design CAN'T POSSIBLY be science! (sarcasm)


15 posted on 12/19/2005 1:40:02 PM PST by Elpasser
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To: doc30
An interesting article, a key point of which is summed up in this comment:

"So the profound problem is what do you do with this DNA once you get it? How do you turn it into an actual organism? You need the genome to encode and make the organism. "But the way biology works, you need the organism to make the genome."

The point being that DNA is not, in itself, sufficient to the question of how life began: you also need to explain how the rest of the organism -- needed to decode and act on the information in the DNA -- came about. Even at the cellular level we're faced with a "systems" problem that needs to be explained.

16 posted on 12/19/2005 1:40:54 PM PST by r9etb
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To: doc30
Several scientific groups are trying to make genes that do not
exist in nature, in hopes of constructing microbes that
perform useful tasks


Well, if they do make a living entity...I hope they don't make
a mis-step that accidentally makes something that outdoes the 1918 flu.

I'm sort of suprised at the seemingly cavalier attitude
around this project. I hope the work is really being done in
conditions that would totally contain (or auto-destruct) if
they find out "what's the worst that could happen?".

In the late 1980s some scientists hoped to "build" a bacterial pathogen
in hopes of understanding the basis of pathogenesis in an bacterium
or fungus harmful to plants.
That group got an extreme scolding and were shut down.
(unless they went dark doing the work for the guvmint...)
17 posted on 12/19/2005 1:41:11 PM PST by VOA
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To: showme_the_Glory
As in inflatable??????

Naw, A silicon based life form would be more realistic.


18 posted on 12/19/2005 1:41:46 PM PST by ASA Vet (Those who know don't talk, those who talk don't know.)
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To: Elpasser
But of course, intelligent design CAN'T POSSIBLY be science! (sarcasm)

My lawn sprinkler proves that natural rain is impossible. In fact, since all human sprinkers are attached to a pipe or hose, this proves rain must be caused by an intelligent being with a large hose, up in the sky.

19 posted on 12/19/2005 1:43:15 PM PST by Right Wing Professor (Liberals have hijacked science for long enough. Now it's our turn -- Tom Bethell)
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To: VadeRetro; Junior; longshadow; RadioAstronomer; Doctor Stochastic; js1138; Shryke; RightWhale; ...
Evolution Ping

The List-O-Links
A conservative, pro-evolution science list, now with over 330 names.
See the list's explanation, then FReepmail to be added or dropped.
To assist beginners: But it's "just a theory", Evo-Troll's Toolkit,
and How to argue against a scientific theory.

20 posted on 12/19/2005 1:43:48 PM PST by PatrickHenry (... endless horde of misguided Luddites ...)
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