So if it's just natural interaction between atoms, and there is no apparent design, then it is a matter that attains to the level of "scientific." And it would be an "unscientific" notion to posit that perhaps what appears to be "random" or "unguided" may actually be designed and executed according to established rules, laws, etc. I see.
Many people working in science and engineering disciplines have faith. Their faith, even their disparate faiths in Judaism, Christianity, Hindusism, etc, does not prevent them from understanding what science is and how it works and working together on it.
However, attempting to shoehorn theology into biology and chemistry, as you are trying to do, does a disservice to both faith and science. I personally believe that the God-of-the-Gaps not only makes for bad science, but bad theology as well.
Please if you cannot understand my points, simply ask me to expand upon them don't just jump off into wild tangents because you think I said something I didn't.