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Prebiotic Soup--Revisiting the Miller Experiment [biogenesis]
Science Magazine ^ | May 2003 | Jeffrey L. Bada and Antonio Lazcano

Posted on 11/02/2003 10:30:46 AM PST by PatrickHenry

"Isn't life wonderful?" sang Alma Cogan and Les Howard in their almost forgotten 1953 hit. That same year, Stanley L. Miller raised the hopes of understanding the origin of life when on 15 May, Science published his paper on the synthesis of amino acids under conditions that simulated primitive Earth's atmosphere (1). Miller had applied an electric discharge to a mixture of CH4, NH3, H2O, and H2--believed at the time to be the atmospheric composition of early Earth. Surprisingly, the products were not a random mixture of organic molecules, but rather a relatively small number of biochemically significant compounds such as amino acids, hydroxy acids, and urea. With the publication of these dramatic results, the modern era in the study of the origin of life began.

Since the late 19th century, the belief in a natural origin of life had become widespread. It was generally accepted that life's defining properties could be understood through physico-chemical characterization of "protoplasm," a term used to describe the viscous translucent colloid found in all living cells (2). Expressions like "primordial protoplasmic globules" were used not only by scientists but also in fiction, from Gilbert and Sullivan's Pooh-Bah in The Mikado (1885) to Thomas Mann's somber imaginary character Adrian Leverkühn in Doktor Faustus (1947). But few dared to be explicit, even in novels. Questioned about the origin of life, a chemist in Dorothy L. Sayers' novel The Documents in the Case (1930) states that "it appears possible that there was an evolution from inorganic or organic through the colloids. We can't say much more, and we haven't--so far--succeeded in producing it in the laboratory."

Some were willing to fill in the details. At the turn of the 20th century, many scientists favored the idea of primordial beings endowed with a plant-like (autotrophic) metabolism that would allow them to use CO2 as their source of cellular carbon. However, some scientists--including A. I. Oparin, J. B. S. Haldane, C. B. Lipman, and R. B. Harvey--had different ideas (3). The most successful and best-known proposal was that by Oparin, who, from a Darwinian analysis, proposed a series of events from the synthesis and accumulation of organic compounds to primordial life forms whose maintenance and reproduction depended on external sources of reduced carbon.

The assumption of an abiotic origin of organic compounds rested on firm grounds. In 1828, F. Wöhler had reported the first chemical synthesis of a simple organic molecule (urea) from inorganic starting materials (silver cyanate and ammonium chloride).

After a large body of research on the synthesis of simple organic compounds accumulated in the 19th century (see figure above), W. Löb achieved the chemical syntheses of simple amino acids such as glycine by exposing wet formamide to a silent electrical discharge and to ultraviolet light (4).

These efforts to produce simple organic compounds from simple reagents heralded the dawn of prebiotic organic chemistry. However, there is no indication that the scientists who carried out these studies were interested in how life began on Earth, or in the synthesis of organic compounds under possible prebiotic conditions. This is not surprising, because the abiotic synthesis of organic compounds was not considered to be a necessary prerequisite for the emergence of life.

From the 1950s, chemists were drawn toward the origin of life. Driven by his interest in evolutionary biology, Melvin Calvin tried to simulate the synthesis of organic compounds under primitive Earth conditions with high-energy radiation sources. He and his group had limited success: the irradiation of CO2 solutions with the Crocker Laboratory's 60-inch cyclotron led only to formic acid, albeit in fairly high yields (5). Miller's publication 2 years later showed how compounds of biochemical importance could be produced in high yields from a mixture of reduced gases.

The origin of Miller's experiment can be traced to 1950, when Nobel laureate Harold C. Urey, who had studied the origin of the solar system and the chemical events associated with this process, began to consider the emergence of life in the context of his proposal of a highly reducing terrestrial atmosphere. Urey presented his ideas in a lecture at the University of Chicago in 1951, followed by the publication of a paper on Earth's primitive atmosphere in the Proceedings of the National Academy of Sciences(6).

Almost a year and a half after Urey's lecture, Miller, a graduate student in the Chemistry Department who had been in the audience, approached Urey about the possibility of doing a prebiotic synthesis experiment using a reducing gas mixture. After overcoming Urey's initial resistance, they designed three apparatuses meant to simulate the ocean-atmosphere system on primitive Earth (3). The first experiment used water vapor produced by heating to simulate evaporation from the oceans; as it mixed with methane, ammonia, and hydrogen, it mimicked a water vapor-saturated primitive atmosphere, which was then subjected to an electric discharge (see the figure below). The second experiment used a higher pressure, which generated a hot water mist similar to that of a water vapor-rich volcanic eruption into the atmosphere, whereas the third used a so-called silent discharge instead of a spark.

Miller began the experiments in the fall of 1952. By comparison with contemporary analytical tools, the paper chromatography method available at the time was crude. Still, after only 2 days of sparking the gaseous mixture, Miller detected glycine in the flask containing water. When he repeated the experiment, this time sparking the mixture for a week, the inside of the sparking flask soon became coated with an oily material and the water turned a yellow-brown color. Chromatographic analysis of the water flask yielded an intense glycine spot; several other amino acids were also detected. Experiments with the second apparatus produced a similar distribution and quantities of amino acids and other organic compounds, whereas the third apparatus with silent discharge showed lower overall yields and much fewer amino acids (primarily sarcosine and glycine).

After Miller showed the impressive results to Urey, they decided to submit them to Science. Urey declined Miller's offer to coauthor the report because otherwise Miller would receive little or no credit. Knowing that a graduate student could have a difficult time getting a paper like this published, Urey contacted the Science editorial office to explain the importance of the work and ask that the paper be published as soon as possible. Urey kept mentioning the results in his lectures, drawing considerable attention from the news media.

The manuscript was sent to Science in early February of 1953. Several weeks went by with no news. Growing impatient, Urey wrote to Howard Meyerhoff, chairman of AAAS's Editorial Board, on 27 February to complain about the lack of progress (7). Then, on 8 March 1953, the New York Times reported in a short article entitled, "Looking Back Two Billion Years" that W. M. MacNevin and his associates at Ohio State University had performed several experiments simulating the primitive Earth--including a discharge experiment with methane wherein "resinous solids too complex for analysis" were produced. The next day, Miller sent Urey a copy of the clipping with a note saying "I am not sure what should be done now, since their work is, in essence, my thesis. As of today, I have not received the proof from Science, and in the letter that was sent to you, Meyerhoff said that he had sent my note for review."

Infuriated by this news, Urey had Miller withdraw the paper and submit it to the Journal of the American Chemical Society. Ironically, at the same time (11 March), Meyerhoff, evidently frustrated by Urey's actions, wrote to Miller that he wanted to publish the manuscript as a lead article and that he wanted Miller--not Urey--to make the final decision about the manuscript. Miller immediately accepted Meyerhoff's offer, the paper was withdrawn from the Journal of the American Chemical Society and returned to Science, and was published on 15 May 1953.

On 15 December 1952, well before the Miller paper was sent to Science, K. Wilde and co-workers had submitted a paper on the attempted electric arc synthesis of organic compounds using CO2 and water to the same journal. They reported that no interesting reduction products, such as formaldehyde, were synthesized above the part-per-million level. This result supported the surmise of Miller and Urey that reducing conditions were needed for effective organic syntheses to take place. Surprisingly, when the paper by Wilde et al. was published in Science on 10 July 1953, it did not mention Miller's paper, although the authors did note that their results had "implications with respect to the origin of living matter on earth."

Miller's paper was published only a few weeks after Watson and Crick reported their DNA double-helix model in Nature. The link between the two nascent fields began to develop a few years later, when Juan Oró demonstrated the remarkable ease by which adenine, one of the nucleobases in DNA and RNA, could be produced through the oligomerization of hydrogen cyanide (8). It would eventually culminate in the independent suggestions of an "RNA world" by Carl Woese, Leslie Orgel, and Francis Crick in the late 1960s and by Walter Gilbert in 1986.

The impact of the Miller paper was not limited to academic circles. The results captured the imagination of the public, who were intrigued by the use of electric discharges to form the prebiotic soup. Fascination with the effects of electricity and spark discharges on biological systems started with the work of L. Galvani in 1780 with frog legs and the discovery of "animal electricity." And an everlasting impression was left in the public's imagination by Mary W. Shelley's Frankenstein (1818), in which Eramus Darwin gained a place for his advocacy of therapies based on electric discharges.

Although in 1953, few envisioned the possibility of Frankenstein monsters crawling out of Miller's laboratory vessels, the public's imagination was captivated by the outcome of the experiment. By the time that the results were corroborated by an independent group 3 years later (9), the metaphor of the "prebiotic soup" had found its way into comic strips, cartoons, movies, and novels, and continues to do so. In Harry Mulisch's novel The Procedure (1998), one of the central characters encounters disaster while paving his way to the glittering halls of Stockholm for achieving the artificial synthesis of life from a primitive soup.

But is the "prebiotic soup" theory a reasonable explanation for the emergence of life? Contemporary geoscientists tend to doubt that the primitive atmosphere had the highly reducing composition used by Miller in 1953. Many have suggested that the organic compounds needed for the origin of life may have originated from extraterrestrial sources such as meteorites. However, there is evidence that amino acids and other biochemical monomers found in meteorites were synthesized in parent bodies by reactions similar to those in the Miller experiment. Localized reducing environments may have existed on primitive Earth, especially near volcanic plumes, where electric discharges (10) may have driven prebiotic synthesis.

In the early 1950s, several groups were attempting organic synthesis under primitive conditions. But it was the Miller experiment, placed in the Darwinian perspective provided by Oparin's ideas and deeply rooted in the 19th-century tradition of synthetic organic chemistry, that almost overnight transformed the study of the origin of life into a respectable field of inquiry.

[Illustrations and footnotes in the original.]


TOPICS: Culture/Society; Miscellaneous; Philosophy
KEYWORDS: abiogenesis; biogenesis; crevolist; earlyearth; evolution; millerexperiment; originoflife
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To: PatrickHenry
Trying to be nice...anyone who believes that molecules will suddenly want to eat and reproduce in a fantastically complex equilibrium, defying entropy...has more blind faith than I do.
61 posted on 11/03/2003 6:21:59 AM PST by metacognative
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To: donh
Actually you have a gobsmack of imagination and the "Consensus". Never underestimate the value of groupthink. After all, you wouldn't want to be laughed at during pe'er review.
62 posted on 11/03/2003 6:43:02 AM PST by DannyTN (Note left on my door by a pack of neighborhood dogs.)
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To: DannyTN
Grouthink, did you just say groupthink?

Never mind, it probably went right over your head.
63 posted on 11/03/2003 7:52:47 AM PST by Ogmios (Since when is 66 senate votes for judicial confirmations constitutional?)
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To: Ogmios
"Never mind, it probably went right over your head. "

Yep, I sense a joke there somewhere, but I missed it.

64 posted on 11/03/2003 7:56:52 AM PST by DannyTN (Note left on my door by a pack of neighborhood dogs.)
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To: DannyTN
The Jokes on you.

Groupthink, something that is taken on faith because a group of people believe it and you wish to fit in.

This is not evolution, evolution has scientific evidence to back it up, given the evidence, a lot of people would themselves come to the conclusion of evolution all by themselves. S, think, think what might it be? Who in this thread might be infected with Groupthink?

I can tell you, but then you would tell me that I am bashing something, and I wouldn't want that.
65 posted on 11/03/2003 8:09:58 AM PST by Ogmios (Since when is 66 senate votes for judicial confirmations constitutional?)
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To: Ogmios
"This is not evolution, evolution has scientific evidence to back it up, given the evidence, a lot of people would themselves come to the conclusion of evolution all by themselves. "

Of course they would. The evidence is right their in front of them. It's in the textbook for crying out loud. The book says evolution is a fact.

66 posted on 11/03/2003 8:19:34 AM PST by DannyTN (Note left on my door by a pack of neighborhood dogs.)
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To: DannyTN
It's in the fossils, it's in the DNA, it's in the plants and animals around you, the evidence is right there to be seen by you and others, if they look. It is called scientific investigation.

It has nothing to do with religion, it has nothing to do with faith, it has nothing to do with believing.

Anyone would come to the conclusion all by themselves if the evidence was laid out in front of them, and it's there to be layed out, it's everywhere, you just have to want to see it.

But if you did, then the group that you're a part of would send you away as an outcast, call you a sinner, tell you that you had been tricked by the devil, tell you that you're an atheist if they really get mean enough.

That my friend is groupthink, and you are the one suffering from it, not those of us who understand that evolution indeed has the scientific evidence to back it, those of us that understand what science truly is.

The textbook may say that evolution is the best scientific theory to explain the evidence, but it says nothing about it being a fact, that's your groupthink talking, not the evidence.

I have yet to see any scietific textbook that says evolution is a fact. Where's the evidence? Because I haven't seen any.
67 posted on 11/03/2003 8:30:34 AM PST by Ogmios (Since when is 66 senate votes for judicial confirmations constitutional?)
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To: bondserv
I believe we were created to throw so that the Angels could watch baseball in October.

LOL!

I'm going to have to steal this one.

68 posted on 11/03/2003 8:31:02 AM PST by <1/1,000,000th%
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To: Ogmios
"it's everywhere, you just have to want to see it. "

Does it really tell you what you think it tells you?

But if you question it, then the group that you're a part of would send you away as an outcast, call you a religious person, tell you that you had been tricked by the preacher, tell you that you're superstitious if they really get mean enough.

69 posted on 11/03/2003 8:38:00 AM PST by DannyTN (Note left on my door by a pack of neighborhood dogs.)
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To: metacognative
And as I and others have explained, there is no entropy to fight.

That is a creationist made up strawman that is a total misunderstanding of the second law of thermodynamics.

And molecules etc create very complicated patterns etc every day. The lattice structure of a snowflake, the making of crystals by certain minerals etc.

Complicated structures are an everyday occurence, so to say that even more complicated ones are impossible as well, is jumping to a major conclusion with unsufficient evidence.
70 posted on 11/03/2003 8:44:07 AM PST by Ogmios (Since when is 66 senate votes for judicial confirmations constitutional?)
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To: Ogmios
"I have yet to see any scietific textbook that says evolution is a fact. Where's the evidence? Because I haven't seen any."

Survival of the Fakiest

Notice the listing of the textbooks at the end of the article.

71 posted on 11/03/2003 8:46:25 AM PST by DannyTN (Note left on my door by a pack of neighborhood dogs.)
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To: DannyTN
But if you question it, then the group that you're a part of would send you away as an outcast, call you a religious person, tell you that you had been tricked by the preacher, tell you that you're superstitious if they really get mean enough.

Well, let's see here.

If I decided to create a nonscientific causation for what I saw, then my fellow scientists would be right in telling me that I was nuts, because to come to a conclusion that is unprovable, nonfalsifiable etc, is not scientific. If I built a hypothesis around the fact that God did it, they would be right to chastise me and call me foolish, because it would be obvious to them that A: I had an agenda or B: was clueless as to what science actually is, or C: both A and B.

The evidence points one way at this point, if given the evidence all by itself, and if I had some scientific training, and had the critical thinking skills necassary, I would probably come to the conclusion that evolution has indeed occurred, might even come up with it by myself, had I never heard of the theory of Evolution but had the evidence available to me. As a matter of fact, I probably would, with some changes probably, because there is no way that I could look at every piece of evidence there is by myself, and that missing evidence would probably help fill in any gaps that I had found in my own hypothesis.

It is a theory based on the available evidence, and if a scientist truly follows the evidence, it is going to lead him right into the direction of the Theory of Evolution.

The evidence does not lie, the evidence is not placed there to fool people, evidence is not set aside because it doesn't fit the theory, the theory is changed to fit the new evidence.

That is science. And if some new piece of evidence comes to light that turns evolution on it's head, and that has yet to happen, then the theory will be replaced with a new theory that explains the old evidence and the new evidence better.

So far evolution has passed every test given to it.

You may laugh and call it Groupthink, but it tells us that you are naive about what science truly is and are trapped yourself within a Groupthink of your own choosing.

I am not saying that's bad, I am just saying that you have chosen to believe it, and that's fine, but don't believe for a minute that it is at all scientific, and has grounds to compete with science, because it does not.

Science does not compete with religion, and religion does not compete with science. Don't want to understand science? That's fine, just don't expect us to respect your opinion on science.
72 posted on 11/03/2003 9:01:40 AM PST by Ogmios (Since when is 66 senate votes for judicial confirmations constitutional?)
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To: DannyTN
Please, give me a link without an agenda.

The discovery institute, nah, they aren't prejudiced are they?

And what they consider calling facts are not what I would call calling facts. They wish for ID to be considered as science, and it is not science, no matter how far we stretch the definition.

73 posted on 11/03/2003 9:05:14 AM PST by Ogmios (Since when is 66 senate votes for judicial confirmations constitutional?)
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To: Loc123
I'm afraid you are mistaken, my friend.

Not terribly likely, in this case. A random report about meteorite genesis theories is hardly a view of the consensus of the scientific community. Is that how you've come to understand science? By treating every headline a major doctrinal position statement? The world is full of theories, and journalists facing deadlines in need of copy. This does not, it bears repeating, constitute how science comes to conclusions.

The present concensus is that life originated on this planet, this might, in the long run, turn out to be wrong, but that is irrelevant to the question at hand. There are appealing possible answers to the present conundrums for the current story you've innumerated (and several you haven't) less dramatic than life falling from the sky in flaming passenger ships.

74 posted on 11/03/2003 9:15:02 AM PST by donh (1)
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To: DannyTN
Actually you have a gobsmack of imagination and the "Consensus". Never underestimate the value of groupthink. After all, you wouldn't want to be laughed at during pe'er review.

No, I have evidence. You appear to think scientific peer review is some sort of gossipy tea ceremony. The function of peer review is to critique evidence, procecures, and reasoning. Disagreement with the author's conclusions is a primary selection criteria for reviewers.

This a rather fundamental aspect of modern science, and an aspect of Popperian falsifiablility--a credo to which the vast majority of scientists, curators, peer review committees, and academic science administrators subscribe.

You are expounding a rather childish, and vastly incorrect, picture, both of peer review, and the nature of scientific theory vetting. Were some biologist to find a rock-solid refutation of the theory of evolution, his career would be made, not suppressed--he'd have his choice of juicy chairs in hundreds of universities around the world.

Like most creationists, your picture of scientific concensus suffers from lack of exposure to how the technical world actually works, and how heavily it is ultimately governed by technical, not social issues, as for example, at your church rally meetings. Galileo's findings were at odds with the governing body of the day, and absolutely all the apparent social odds were against the theory of solar centrality, yet, in the end, everybody knew the earth moved around the sun. Why was that? Was it because of Galileo's supreme capacity as a scientific politico? Not likely on the evidence of the results for Galileo.

75 posted on 11/03/2003 9:32:10 AM PST by donh (1)
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To: DannyTN
Survival of the Fakiest

Notice the listing of the textbooks at the end of the article.

I'd be curious to see a list of the "logical fallacies" (your cite's words) upon which these major high school textbooks rely. Absent such a list, may I infer that by "logical fallacies" I can read "inductive reasoning with which the Discovery Institute is not in accord"?

76 posted on 11/03/2003 9:43:11 AM PST by donh (1)
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To: Ogmios
"Please, give me a link without an agenda"

It listed the textbooks. What more do you want? So what if they want ID presented as a theory. That doesn't deligitimize their criticism of the way evolution is presented.

Tell me someone who has looked at the books critically that doesn't have an agenda.

77 posted on 11/03/2003 9:51:45 AM PST by DannyTN (Note left on my door by a pack of neighborhood dogs.)
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To: DannyTN
The discovery institute does not look at them critically and fairly, if the textbook disagrees with them, then it is stating a fact that they believe is wrong.

Therefore any scientific textbook with evolution in it is wrong to them. I am surprised the list isn't longer..
78 posted on 11/03/2003 9:57:11 AM PST by Ogmios (Since when is 66 senate votes for judicial confirmations constitutional?)
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To: donh
"You appear to think scientific peer review is some sort of gossipy tea ceremony. The function of peer review is to critique evidence, procecures, and reasoning."

I think pe'er review is often a good process. But I also think it's a process that can become dogmatic and exclusionary.

In fact, many valid new ideas were initially ridiculed in the pe'er review process. They weren't usually ridiculed on a solid review of the science. Instead they tended to be ridiculed based on the concept, regardless of the science.

"When a true genius appears in this world, you may know him by this sign, that the dunces are all in confederacy against him." - Jonathan Swift


79 posted on 11/03/2003 9:59:47 AM PST by DannyTN (Note left on my door by a pack of neighborhood dogs.)
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To: DannyTN
Why do you place an apostrophe in "peer"?
80 posted on 11/03/2003 10:13:09 AM PST by PatrickHenry
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