If you two instances are running then we can just leave them alone.
The set advanced methods should be set during installation. I am a little concerned that you did not set the machineid= 1 or 2.
Let it run overnight. Then look at in each folder at the "unitinfo.txt" file. That will tell you what you are running and what the progress is.
I didn't. I hit the download and it didn't ask anything of me when it said files downloaded. Can I just get rid of it and start from scratch?