I gave up on SGU about 3 episodes ago.
I don't need weekly mayhem and enemies at the gate; I do enjoy the subtleties of the position they find themselves in, and character development they seem to be front loading.
The twist of the communication stones has possibilities, but I feel they're using it too much. Still, given the position they're in, using such a capability early on would be a natural course.
All said, yea, I'd like to see them gain more control over their vessel, and be able to chart their own course. Although it seems like the ship is learning about them as they learn about it, and it gives them as much as it thinks they can handle, and maybe knows what they need more than they do. That makes it tedious from a purely entertainment point of view, but not necessarily from a story telling point of view.
Still, they're going to have to liven things up a bit or they'll lose the instant gratification crowd, if they haven't done so already.