Yes, that is because of their role in introducing idol worship into Israel (Judges 17-18)
Yes, those tribes are restored in the Millennial reign.
One might ask since Joseph had 2 sons, Ephraim and Manasseh, and Manasseh is listed having 12,000, just who is included in the 12,000 of Joseph in Revelation 7 if it is not Ephraim?
Just an observation.