So if the Church says one thing, and the Prophets and Apostles taught something else, which do we go with?
There can be no contradiction since the the Holy Spirit, the Spirit of truth (Jn 14:16):
1) Has spoken through the Prophets. (2 Pet 1:20-21)
2) Has taught and governed through the Apostles (Acts 2:1-4; 15:28).
3) Works and teaches through His Church. (1 Cor 12:4-11, Jn 14:26)