Discover Magazine: The Arrow of Disease
He does indeed make the linkage to domestication of animals though not with much in the way of evidence, more of a conclusion he's drawing based on some other relevant material. But basically he's implying that the indians simply didn't have diseases because diseases all come from animals. And of course Europeans were riddled with them because ... animals. I'd like more evidence before I just buy into that. Maybe with a whole book to make the case he's able to put more behind it.
He makes a pretty good case for it in the book, but not just with the Americas.