I understand that. The USSC ruling was the correct one, but I believe it is never a good idea for churches to accept taxpayer funds unless there is a serious compelling need for it.
You are right and it’s exactly why I objected the GWB’s program to have the gubmint partner with church. This is mixing oil with water and if they are wise, churches ought to run from these programs. That said, if they do decide to take advantage, they should be treated like any other nonprofit.