First, human intelligence took the raw materials and, assembled the technology and substance needed to make X-rays. Second, although unseen, all the particles necessary to complete this process and make it repeatable have remained organized and consistent so as to make the application of human intelligence possible.
The fact that X-rays themselves are not mentioned in the Bible has no bearing on whether or not they are intelligently designed. When the Bible speaks of intelligent design as related to the things science has to work with, it denotes all the substance and processes science has heretofore been able to indentify, plus many things science has yet to identify.
Xrays are photons, no magic there.
You wrote: "First, human intelligence took the raw materials and, assembled the technology and substance needed to make X-rays. Second, although unseen, all the particles necessary to complete this process and make it repeatable have remained organized and consistent so as to make the application of human intelligence possible. "
Reply:
You seem to have an odd view. Is it your view that X-rays did not exist before Roentgen discovered them?
I cannot fathom what you mean by 'organized matter'. A snow crystal is highly organized. A mammalian blasosphere in utero is highly organized and develops into a fetus, seemingly contrary to the 2nd law. X-rays and gamma rays are evident in the universe beyond earth. I do not understand your point.