Theodore Beza and John Rainolds (the most prominent English Puritan theologian before the Restoration) wrote extensive replies to Bellarmine, as did the High Anglican Lancelot Andrewes.
There are also the three volumes of St. Peter Canisius - The Summary of Christian Doctrine and the works of St. Lawrence of Brindisi whose three volumes of Controversies address matters of Protestant exegesis in detail.
These are difficult to find today, especially online, but they comprise thousands of pages of closely reasoned arguments.
More recent books that are readily available are such works as By What Authority? by Mark Shea, If Protestantism is True by Devin Rose and Pillars of Sola Scriptura by Dave Armstrong, among many, many others.
I bet this dovetails with my latest study of the early history of the Church.