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Vanity - Ebola model projects future case based on Daily Transmission Rate
Self | September 15, 2014 | Scouter

Posted on 09/15/2014 2:50:13 PM PDT by scouter

My User Name on Free Republic is Scouter. I have been a member of Free Republic for 14 years. I don't write many vanity posts, but I consider this one to be very important. I had been working on this post for several days, and I was planning to post it tomorrow. But the Drudge Report headline CDC: PREPARE FOR EBOLA has moved up my timeline.

I have developed a model for making future projections of the number of Ebola cases. I have undertaken this project for several reasons. First, out of simple professional curiosity. Second, I believe the time has come to be concerned and to prepare for the possibility that the Ebola epidemic could spread to other countries, including the United States. And third, my daughter will soon begin working as a nurse in a major Pediatric Intensive Care Unit, which will likely see some of the first Ebola cases in the United States, should it make an appearance here.

I am not an epidemiologist, and I have no inside knowledge about the current Ebola epidemic. But I have spent the last 26 years of my career applying computers to the practice of medicine and to medical data. I hold a Master's Degree in Medical Informatics from a major university known for their expertise in that field. I currently work in that field at a large, famous, metropolitan teaching hospital. I am remaining anonymous only because I don't want my employer to be held responsible for this post in any way. It is my work exclusively, and I am responsible for any information or projections it makes.

The numbers produced by this model are "projections", not "predictions". That is to say, I do not predict that there will be x number of Ebola cases on any given future date. Rather, I "project" into the future, assuming a constant Daily Transmission Rate (DTR), based on past data. Any number of factors can influence future DTR, in either a positive (bad) direction, or in a negative (good) direction. There is no way to know how these factors will actually play out. If there were, then we would be able to make actual preditions. As it is, we are left only with the ability to say "If Ebola continues to spread at the same rate it has been spreading for the past x number of days (or months), then this is approximately how many people who will have contracted the disease as of this particular date in the future." Not ideal, for sure, but still quite useful to understand the seriousness of the situation.

I have validated the model based on actual data by calculating the DTR for various periods of time and comparing the model's projections with what actually happened in subsequent periods. This is the same concept that is being used by epidemiologists at CDC and elsewhere. It is a valid method, within the constraints I have mentioned above. My model has been completely in line with projections I have seen quoted in the mainstream news. It works quite well. If anything, my model's projections are a bit more conservative than some projections you may have seen in the mainstream media. I just take them out further than you have seen in other places.

That being said, the following projections are based on the Daily Transmission Rate (DTR) from June 1 through September 10, the last date for which I have data. The DTR has remained relatively stable over that period. To be conservative I assumed that the reported number of cases represent the true size of the epidemic. However, the WHO, CDC, Medicins Sans Frontieres, and Samaritan's Purse all agree that the number of reported cases represents only 25% to 50% of the true number of cases. I have decided to be conservative in the numbers published below, but the model allows you to adjust this percentage.

As you review these projections, remember to pray for all those who are currently affected by this terrible disease, those who have it, those who will die, and their families. Do not forget that these are real people with eternal souls, who will either go to heaven or to hell, depending on whether or not they die in friendship with God. Pray, too, for an end to this epidemic. Do not underestimate the power of prayer!

The following projections assume that the currently reported cases represent 100% of the true epidemic size. In other words, that there are no cases that were missed by the epidemiologists. We know this not to be true, so we know that the "best case" is something worse than this, assuming the Daily Transmission Rate remains stable.

Scouter Ebola Projection Model Version 1.0 - Ebola Case Projections

*********************************************************
Projection Parameters
*********************************************************
Start Date: 6/1/2014
End Date: 9/10/2014
Reported cases represent 100% of the true epidemic size
Daily Transmission Rate (DTR): 1.00422415489918
*********************************************************

Weekly for the Next 8 Weeks

Date        Cases                 Deaths                Daily New Cases       Daily New Deaths      
==========  ====================  ====================  ====================  ====================
09/10/2014                 4,845                 2,376                   171                    84
09/17/2014                 6,227                 3,054                   219                   108
09/24/2014                 8,003                 3,925                   282                   138
10/01/2014                10,285                 5,044                   362                   178
10/08/2014                13,218                 6,482                   465                   228
10/15/2014                16,988                 8,331                   598                   293
10/22/2014                21,833                10,707                   769                   377
10/29/2014                28,060                13,761                   988                   485


End of Month for the Next Year from the End Date

Date        Cases                 Deaths                Daily New Cases       Daily New Deaths      
==========  ====================  ====================  ====================  ====================
09/30/2014                 9,923                 4,866                   349                   171
10/31/2014                30,146                14,783                 1,061                   521
11/30/2014                88,357                43,331                 3,111                 1,526
12/31/2014               268,427               131,637                 9,451                 4,635
01/31/2015               815,475               399,911                28,713                14,081
02/28/2015             2,224,815             1,091,055                78,336                38,416
03/31/2015             6,758,941             3,314,601               237,983               116,707
04/30/2015            19,810,535             9,715,135               697,531               342,071
05/31/2015            60,183,993            29,514,379             2,119,084             1,039,204
06/30/2015           176,399,989            86,506,991             6,211,061             3,045,920
07/31/2015           535,899,508           262,806,446            18,869,075             9,253,441
08/31/2015         1,628,051,594           798,400,534            57,323,860            28,111,763
09/10/2015         2,329,918,242         1,142,597,677            82,036,655            40,230,979

The following projections assume that the currently reported cases represent 75% of the true epidemic size. Remember that Medicins Sans Frontieres, Samaritan's Purse, the CDC, and WHO all agree that the number of reported cases already vastly underestimates the true size of the epidemic. They say by a factor of 2 to 4.

Scouter Ebola Projection Model Version 1.0 - Ebola Case Projections

*********************************************************
Projection Parameters
*********************************************************
Start Date: 6/1/2014
End Date: 9/10/2014
Reported cases represent 75% of the true epidemic size
Daily Transmission Rate (DTR): 1.00422415489918
*********************************************************

Weekly for the Next 8 Weeks

Date        Cases                 Deaths                Daily New Cases       Daily New Deaths      
==========  ====================  ====================  ====================  ====================
09/10/2014                 6,460                 2,376                   235                   115
09/17/2014                 8,373                 4,106                   305                   149
09/24/2014                10,853                 5,322                   395                   194
10/01/2014                14,068                 6,899                   512                   251
10/08/2014                18,234                 8,942                   663                   325
10/15/2014                23,635                11,591                   860                   422
10/22/2014                30,635                15,024                 1,115                   547
10/29/2014                39,709                19,473                 1,445                   708


End of Month for the Next Year from the End Date

Date        Cases                 Deaths                Daily New Cases       Daily New Deaths      
==========  ====================  ====================  ====================  ====================
09/30/2014                13,556                 6,648                   493                   242
10/31/2014                42,764                20,972                 1,556                   763
11/30/2014               129,996                63,750                 4,729                 2,319
12/31/2014               410,085               201,107                14,920                 7,317
01/31/2015             1,293,657               634,413                47,066                23,081
02/28/2015             3,651,570             1,790,739               132,851                65,150
03/31/2015            11,519,271             5,649,079               419,092               205,524
04/30/2015            35,016,714            17,172,283             1,273,972               624,759
05/31/2015           110,464,001            54,171,820             4,018,881             1,970,869
06/30/2015           335,792,614           164,673,529            12,216,744             5,991,122
07/31/2015         1,059,294,023           519,480,413            38,539,038            18,899,640
08/31/2015         3,341,657,268         1,638,757,001           121,575,553            59,620,953
09/10/2015         4,840,743,028         2,373,912,370           176,115,013            86,367,239

Obviously, there are many factors that will affect these projections. Rather, this model simply projects the number of cases and fatalities based on the current Daily Transmission Rate (DTR), which has been stable for about 3 months. Consider the following other factors that are likely to change the DTR (either for good or for bad) as we move forward from today:

  1. Ebola is most easily contained in rural villages which can be easily quarantined.
  2. The virus is already spreading in densely populated areas.
  3. The virus is most successfully treated in hospitals, but hospitals in the affected areas are already overwhelmed, with Ebola patients already dying in the streets. This will clearly work to increase the Daily Transmission Rate.
  4. On the other hand, as more and more aid is sent to West Africa, in the form of well trained personnel, equipment, and supplies, this will work to reduce the DTR.
  5. As more people are educated how to avoid contracting and spreading the disease, this will work to decrease the DTR.
  6. There are plenty of other factors, including the possibility of a vaccine, better treatment methods, better education, etc., that will influence the DTR over time.
  7. The influence of weather on the DTR is unknown, but it is reasonable to assume that the weather will have both a direct and indirect impact on the DTR. The impact may be favorable in some effects, and unfavorable in others.

While the numbers quoted above are grim, they do not yet represent fact. Do not panic, but do not be complacent, either. Any preparations you make to "shelter in place" will serve you well for other contingencies, too.

On the other hand, epidemiologists are already saying that the number of cases is already doubling every two weeks. That means that the numbers I've posted above are actually quite conservative.

This model is contained within a macro-enabled Microsoft Excel 2010 spreadsheet (i.e., a .xlsm file). I would be willing to share it with other Freepers if someone can provide a place to post it for download and can tell me how to sanitize my name from it (again, I don't want my employer to be in any way held accountable for this).


TOPICS: Culture/Society; Foreign Affairs; Government; News/Current Events
KEYWORDS: ebola; epidemic; projections
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To: exDemMom
Authorities stated that they would be medically checked, but some are carriers who may not outwardly display any symptoms .

exDemMom:" Without symptoms, Ebola is not contagious."

True , but it takes 2 - 10 days after exposure before the first symtoms may show.
What if someone developes symptoms after going through airport screening and/or medical testing , and is among the masses of the Hajj when symptoms show ?
Don't you beleive that the Islamo-facists/ISIS is already aware of the potential destruction that could be wrought world-wide ?

41 posted on 09/15/2014 4:16:02 PM PDT by Tilted Irish Kilt
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To: scouter; ElenaM

http://www.pbs.org/wgbh/pages/frontline/health-science-technology/ebola-outbreak/map-how-the-ebola-outbreak-spread-through-africa/

The link shows a map with brief comments on the spread of Ebola. Tells in personal terms how it can spread and multiply, along with the numbers. The comments for the first dot on the map:

Dec 6, 2013 — The outbreak’s first suspected victim, a 2-year-old Guinean boy living in Meliandou village, dies after four days of fever, vomiting and diarrhea. The boy’s mother dies 10 days later, followed by his 3-year-old sister on Dec. 29, and his grandmother on New Year’s Day. Over the next few weeks, a local nurse and a village midwife also die.

I’m no expert, but the only thing I’ve seen on Excel spreadsheets that identifies the source can be easily changed/deleted and is under “file”, then “properties”.


42 posted on 09/15/2014 4:18:18 PM PDT by 21twelve (http://www.freerepublic.com/focus/f-news/2185147/posts 2013 is 1933 REBORN)
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To: 21twelve
I have not heard a reasonable explanation why the “developed” world would have a lower rate of transmission. Better sanitation of course, but that sure doesn’t seem to prevent the transmission of the common cold.

Or how there's diseases that people catch usually only while in the hospital such as mrsa or c-dif. Clearly they can't sanitize enough to stop this so what makes ebola different?

Plus, in the developed world a sick person can travel to and from work (bus, train, elevator, etc.) and cover 20 miles in a day. A guy in some small village in Africa might travel 4 blocks in a week.

And how good are busses, trains, elevators, etc actually sanitized?

Our health care system is obviously better, but there are only a certain number of hospital beds. A quick search showed 10,000 in Minnesota. Maybe goes up to 50,000 with the National Guard, etc. setting up field hospitals. How many will still not be able to get treatment.

Plus first responders and doctors will be among the first to get sick and die.

43 posted on 09/15/2014 4:19:02 PM PDT by DouglasKC
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To: Tilted Irish Kilt

Doesn’t bother me if they infect Mecca.


44 posted on 09/15/2014 4:21:15 PM PDT by Dallas59
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To: scouter

I’m sorry. CFR is Case Fatality Rate, to calculate number of deaths.


45 posted on 09/15/2014 4:23:02 PM PDT by ElenaM
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To: scouter

I hope you are as wrong with these projections as the Global Warming charts....


46 posted on 09/15/2014 4:25:07 PM PDT by GraceG (No, My Initials are not A.B.)
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To: DouglasKC
How often do they clean? I don't know. But a search did find that one could adopt a bus stop to take care of. Except they canceled it due to cost. Although they still will mail you a garbage bag if you are an existing volunteer! (Hmm, probably 75 cents to mail a 20 cent garbage bag!)

Adopt-A-Stop Program
Adopt-A-Stop
Sorry, we are not accepting any new applications until further notice.

This program was affected by cost reduction measures implemented in an effort to reduce King County Metro Transit's major budget shortfall for 2009 and 2010.

Transit will continue to provide assistance to all existing volunteers.

To have plastic liners mailed to you, please call the Work Center at 206-477-3850.

47 posted on 09/15/2014 4:29:33 PM PDT by 21twelve (http://www.freerepublic.com/focus/f-news/2185147/posts 2013 is 1933 REBORN)
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To: Dallas59
Dallas59:" Doesn’t bother me if they infect Mecca."

Me either , .. but they all return home.
Even the ones who participate that come from the USA

48 posted on 09/15/2014 4:34:51 PM PDT by Tilted Irish Kilt
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To: Dallas59

Over 11,000 people from the United States do that Mecca thing every year. I was surprised that it was that low of a number. Although Ebola is a lot like buying a lottery ticket - “It only takes one!”.


49 posted on 09/15/2014 4:35:00 PM PDT by 21twelve (http://www.freerepublic.com/focus/f-news/2185147/posts 2013 is 1933 REBORN)
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To: exDemMom
Without symptoms, Ebola is not contagious.

Tell that to the nurse that got Ebola from the Liberian/US diplomat then passed it on to a patient in the hospital while she was not symptomatic. We are being told a lot of things to keep people from panicking that are not adding up to truth.

While I understand the need to keep the public calm some of the lies just help the spread.

50 posted on 09/15/2014 4:41:37 PM PDT by Lady Heron
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To: DouglasKC
DouglasKC:" Our health care system is obviously better, but there are only a certain number of hospital beds. A quick search showed 10,000 in Minnesota. Maybe goes up to 50,000 with the National Guard, etc. setting up field hospitals. How many will still not be able to get treatment."

Dont forget that WHO/CDC numbers are not totally accurate
There are UN workers there whose job is is to turn away the sick since hospitals are already overwhelmed, and understaffed.
Last count I saw by an U.N. official at one of the hospitals in Nigeria was that 30% were turned away.
DouglasKC:"Plus first responders and doctors will be among the first to get sick and die."

Nigeria has already lost 50% of its medically trained personell.

51 posted on 09/15/2014 4:41:41 PM PDT by Tilted Irish Kilt
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To: GraceG

Right now Ebola is centered in west Africa. I wonder how long it will be before Morocco, Algeria, Libya, Sudan and Egypt are infected. Then it would likely hit Syria and Iraq.

This might take care of the ISIS problem


52 posted on 09/15/2014 4:44:35 PM PDT by Zenjitsuman (New Boss Nancy Pelosi)
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To: Tilted Irish Kilt

Gee whiz...and they’re all going to Saudi.

That’s just...awful.


53 posted on 09/15/2014 4:50:00 PM PDT by Rich21IE
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To: DouglasKC
DouglasKC:" How many will still not be able to get treatment."

Treatment is to keep the patient hydrated through early treatment of anti-diuretics, , saline IV's , and balanced electro-lytes.
Saline IV's are already in short supply in the US.
Don't forget that some 30% of people who come to the overwhelmed hospitals are being turned away by UN/WHO/CDC and return home for care, thus infecting their families.

With medical treatment there is a 30% survival rate.
Without medical treatment there is a 10% survival rate.

54 posted on 09/15/2014 4:57:11 PM PDT by Tilted Irish Kilt
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To: Tilted Irish Kilt; Dallas59
Dallas59:" Doesn’t bother me if they infect Mecca." Me either , .. but they all return home. Even the ones who participate that come from the USA

And if it hasn't already happened then what exactly is stopping radical Islamists from purposely exposing themselves to the disease and then traveling to the US and Isreal and infecting as many people as possible? We know they have no problems doing suicide bombings. How is this any different?

55 posted on 09/15/2014 5:04:51 PM PDT by DouglasKC
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To: Rich21IE
Rich21IE:" Gee whiz...and they’re all going to Saudi."

And then they come home ... Home to the USA .
Maybe your local hospital can handle 2 , maybe 4 Ebola patients at a time.
But what does your local hospital do when there are 20 patients , and there is no more room,pateints in the hallway, and some staff may already be showing symptoms.
Then what do you do when there are 30 patients who are turned away each day ?
Now you get the picture of what is happening in West Africa where they have already lost 50% of their trained medical staff , and have to rely on volunteers.

56 posted on 09/15/2014 5:05:32 PM PDT by Tilted Irish Kilt
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To: DouglasKC
DouglasKC:" How is this any different?"

EXACTLY TRUE !
It's not different, in their mind

57 posted on 09/15/2014 5:08:43 PM PDT by Tilted Irish Kilt
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To: Tilted Irish Kilt

What happens when it gets loose in a petri dish like San Francisco?


58 posted on 09/15/2014 5:09:00 PM PDT by tacticalogic
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To: tacticalogic

I would like some opinions from those who think this is serious and are preparing to shelter in place.

What is the point you batten down? The first few cases in a major city? Cases reported in a hospital within 100 miles?
Cases at your local hospital?


59 posted on 09/15/2014 5:12:50 PM PDT by Gadsden1st
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To: Tilted Irish Kilt
consider the Hajj Someone on the Ebola Surveillance board stated that there were 77,000 Nigerians scheduled to participate this year.

Oh My Allah!....the Horribility!

60 posted on 09/15/2014 5:13:55 PM PDT by ROCKLOBSTER (Celebrate "Republicans Freed the Slaves" Month.)
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