From what you describe, it’s sounds like a perforation. I would ask your doctor about it.
Sometimes a perforation does not cause a problem in the beginning, but causes major problems in the future.
If I were you, just “play dumb”, google some info about perforation and bring it into the doctor.
Although, sometimes roots are quite odd and it could be nothing. Did you have any bleeding during the procedure?
Will the permanent filling be applied over the gutta percha, or will he try to pull the percha and insert steel pins? The root canal was done down through a gold crown which is pretty much being left in place.