Publications:
Lynch, M. 1974. The phytoplankton of the Allegheny Reservoir from May 1972 to
September 1973. Science Studies (St. Bonaventure University) 30: 5-29.
Shapiro, J., V. Lamarra, and Lynch, M. 1975. Biomanipulation: An ecosystem
approach to lake restoration, pp. 85-96. In P. L. Brezonik and J. L. Fox (eds.)
Water Quality Management Through Biological Control. Proc. Symp. Univ.
Florida.
Lynch, M. 1977. Zooplankton competition and plankton community structure.
Limnology and Oceanography 22: 775-777.
Lynch, M. 1977. Fitness and optimal body size in zooplankton populations.
Ecology 58: 763-774.
Lynch, M. 1978. Complex interactions between natural coexploiters - Daphnia
and Ceriodaphnia. Ecology 59: 552-564.
Lynch, M. 1979. Predation, competition, and zooplankton community structure:
An experimental study. Limnology and Oceanography 24: 253-272.
Lynch, M. 1980. The evolution of cladoceran life histories. Quarterly Review
of Biology 55: 23-42.
Lynch, M. 1980. Predation, enrichment, and the evolution of cladoceran life
histories: A theoretical approach. In W. C. Kerfoot (ed.) The Evolution and
Ecology of Zoplankton Communities. American Society of Limnology and
Oceanography Special Symposium No. 3: 367-376.
Lynch, M. 1980. Aphanizomenon blooms: Alternate control and cultivation by
Daphnia pulex. In W.C. Kerfoot (ed.) The Evolution and Ecology of Zooplankton
Communities. American Society of Limnology and Oceanography Special Symposium
No. 3: 299-304.
Lynch, M. 1981. Predation, enrichment, and phytoplankton community structure.
Limnology and Oceanography 26: 86-102.
Lynch, M., B. Monson, M. Sandheinrich, and L. Weider. 1981. Patterns of
size-specific mortality in zooplankton populations. Verh. Internat. Verein.
Limnol. 21: 363-368.
Lynch, M. 1982. How well does the Edmondson-Paloheimo model approximate
instantaneous birth rates? Ecology 63: 12-18.
Lynch, M. 1983. Ecological genetics of Daphnia pulex. Evolution 37: 358-374.
Weis, A., P. Price, and M. Lynch. 1983. Selection for clutch size in the
gall-maker Asteromyia carbonifera. Ecology 64: 688-695.
Lynch, M. 1983. Estimation of size-specific mortality rates in zooplankton
populations by periodic sampling. Limnology and Oceanography 28: 533-545.
Lynch, M., and R. Ennis. 1983. Resource availability, maternal effects, and
longevity. Exper. Gerontology 18: 147-165.
Lynch, M., and W. Gabriel. 1983. Phenotypic evolution and parthenogenesis.
American Naturalist 122: 745-764.
Lynch, M. 1984. The genetic structure of a cyclical parthenogen. Evolution
38: 186-203.
Lynch, M. 1984. The limits to life history evolution in Daphnia. Evolution
38: 465-482.
Lynch, M. 1984. Destabilizing hybridization, general-purpose genotypes, and
geographic parthenogenesis. Quarterly Review of Biology 59: 257-290.
Lynch, M. 1984. The selective value of alleles underlying polygenic traits.
Genetics 108: 1021-1033.
Lynch, M. 1985. Elements of a mechanistic theory for the life history
consequences of food limitation. Ergeb. Limnol. 21: 351-362.
Lynch, M. 1985. Speciation in the Cladocera. Verh. Internat. Verein. Limnol.
22: 3116-3123.
Lynch, M. 1985. Spontaneous mutations for life history characters in an
obligate parthenogen. Evolution 39: 804-818.
Lynch, M., L. Weider, and W. Lampert. 1986. Measurement of the carbon balance
in Daphnia. Limnology and Oceanography 31: 17-33.
Lynch, M. 1986. Random drift, uniform selection, and the degree of population
differentiation. Evolution 40: 640-643.
Lynch, M., and W. G. Hill. 1986. Phenotypic evolution by neutral mutation.
Evolution 40: 915-935.
Lynch, M. 1987. The consequences of fluctuating selection for isozyme
polymorphisms in Daphnia. Genetics 115: 657-669.
Lynch, M., and W. Gabriel. 1987. Environmental tolerance. American Naturalist
129: 283-303.
Lynch, M., and W. Gabriel. 1987. Evolution of breadth of biochemical
adaptation, pp. 67-83. In P. Calow (ed.) Evolutionary Physiological Ecology.
Cambridge Univ. Press, Cambridge, UK.
Kerfoot, W. C., and M. Lynch. 1987. Branchiopod communities: associations
with planktivorous fish in space and time, pp. 367-378. In W.C. Kerfoot and A.
Sih (eds.) Predation. Univ. Press New England, Hanover, NH.
Lynch, M. 1987. The evolution of intrafamilial interactions. Proc. Natl.
Acad. Sci. USA 84: 8507-8511.
Lynch, M. 1988. The rate of polygenic mutation. Genetical Research 51:
137-148.
Lynch, M. 1988. The divergence of neutral quantitative characters among
partially isolated populations. Evolution 42: 455-466.
Lynch, M. 1988. Path analysis of ontogenetic data, pp. 29-46. In L. Persson
and B. Ebenman (eds.) The Dynamics of Size-structured Populations.
Springer-Verlag.
Lynch, M., and S. J. Arnold. 1988. Measurement of selection on size and
growth, pp. 47-59 In L. Persson and B. Ebenman (eds.) The Dynamics of
Size-structured Populations. Springer-Verlag.
Lynch, M. 1988. Estimation of relatedness by DNA fingerprinting. Mol. Biol.
Evol. 5: 584-599.
Lynch, M. 1988. Design and analysis of experiments on random drift and
inbreeding. Genetics 120: 791-807.
Lynch, M. 1989. Phylogenetic hypotheses under the assumption of neutral
quantitative genetic variation. Evolution 43: 1-17.
Lynch, M., K. Spitze, and T. Crease. 1989. The distribution of life history
variation in Daphnia pulex. Evolution 43: 1724-1736.
Lynch, M. 1989. The life history consequences of resource depression in
Daphnia pulex. Ecology 70: 246-256.
Lynch, M. 1990. The rate of morphological evolution in mammals from the
standpoint of the neutral expectation. American Naturalist 136: 727-741.
Lynch, M., and T. Crease. 1990. The analysis of population survey data on DNA
sequence variation. Mol. Biol. Evol. 7: 377-394.
Crease, T., M. Lynch, and K. Spitze. 1990. A hierarchical analysis of
population genetic variation in nuclear and mitochondrial genes in Daphnia. Mol.
Biol. Evol. 7: 444-458.
Lynch, M. 1990. The similarity index and DNA fingerprinting. Mol. Biol. Evol.
7: 478-484.
Lynch, M., and W. Gabriel. 1990. Mutation load and the survival of small
populations. Evolution 44: 1725-1737.
Gabriel, W., R. Bürger, and M. Lynch. 1991. Population extinction by
mutational load and demographic stochasticity, pp. 49-59. In A. Seitz, and V.
Loeschcke (eds.) Species Conservation: a Population Biological Approach.
Birkhäuser Verlag, Basel.
Lynch, M. 1991. Methods for the analysis of comparative data in evolutionary
biology. Evolution 45: 1065-1080.
Lynch, M. 1991. The genetic interpretation of inbreeding depression and
outbreeding depression. Evolution 45: 622-629.
Lynch, M. 1991. Analysis of population genetic structure by DNA
fingerprinting, pp. 113-126. In T. Burke, G. Dolf, A. J. Jeffreys, and R. Wolff
(eds.) DNA Fingerprinting: Approaches and Applications. Birkhäuser Verlag,
Basel.
Crease, T. J., and M. Lynch. 1991. Ribosomal DNA variation in Daphnia pulex.
Mol. Biol. Evol. 8: 620-640.
Spitze, K., J. Burnson, and M. Lynch. 1991. The covariance structure of life
history characters in Daphnia pulex. Evolution 45: 1081-1090.
Lynch, M., W. Gabriel, and A. M. Wood. 1991. The adaptive and demographic
response of plankton populations to environmental change. Limnol. Oceanogr. 36:
1301-1312.
Cohen, J. E., M. Lynch, and C. E. Taylor. 1991. Forensic DNA tests and
Hardy-Weinberg equilibrium. Science 253: 1037.
Lynch, M. 1992. The life history consequences of resource depression in
Ceriodaphnia quadrangula and Daphnia ambigua. Ecology 73: 1620-1629.
Gabriel, W., and M. Lynch. 1992. The selective advantage of reaction norms
for environmental tolerance. J. Evol. Biol. 5: 41-59.
Lynch, M., and R. Lande. 1993. Evolution and extinction in response to
environmental change, pp. 234-250. In P. Kareiva, J. Kingsolver, and R. Huey
(eds.) Biotic Interactions and Global Change. Sinauer Assocs., Inc. Sunderland,
MA.
Lynch, R. Bürger, D. Butcher, and W. Gabriel. 1993. Mutational meltdowns in
asexual populations. J. Heredity 84: 339-344.
Lynch, M., and P. Jerrol. 1993. A method for calibrating molecular clocks and
its application to animal mitochondrial DNA. Genetics 135: 1197-1208.
Lynch, M., and K. Spitze. 1994. Evolutionary genetics of Daphnia, pp.
109-128. In L. Real (ed.) Ecological Genetics. Princeton Univ. Press.
Lynch, M. 1994. The neutral theory of phenotypic evolution, pp. 86-108. In L.
Real (ed.) Ecological Genetics. Princeton Univ. Press.
Gabriel, W., M. Lynch, and R. Bürger. 1994. Muller's ratchet and mutational
meltdowns. Evolution 47: 1744-1757.
Lynch, M., and B. Milligan. 1994. Analysis of population-genetic structure
using RAPD markers. Molecular Ecology 3: 91-99.
Bürger, R., and M. Lynch. 1994. Evolution and extinction in a changing
environment: a quantitative-genetic analysis. Evolution 49: 151-163.
Lynch, M., and H. W. Deng. 1994. Genetic slippage in response to sex.
American Naturalist 144: 242-261.
Toline, C. A., and M. Lynch. 1994. Mutational divergence of life-history
traits in an obligate parthenogen. Genome 37: 33-35.
Avise, J. C., S. M. Haig, O. A. Ryder, M. Lynch, and C. J. Geyer. 1995.
Descriptive genetic studies: applications in population management and
conservation biology, pp. 183-244. In J. D. Ballou, M. Gilpin, and T. J. Foose
(eds.) Population Management for Survival and Recovery. Columbia Univ. Press,
New York.
Conery, J. S., M. Lynch, and T. Hovland. 1995. Irregular computations on SIMD
machines: a case study. Proc. 5th Symp. Frontiers of Massively Parallel
Computation: 222-230.
Lehman, N., M. E. Pfrender, P. A. Morin, T. J. Crease, and M. Lynch. 1995. A
hierarchical molecular phylogeny of the genus Daphnia. Mol. Phylog. Evol. 4:
395-407.
Lynch, M., J. Conery, and R. Bürger. 1995. Mutational meltdowns in sexual
populations. Evolution 49: 1067-1080.
Lynch, M., J. Conery, and R. Bürger. 1995. Mutation accumulation and the
extinction of small populations. American Naturalist 146: 489-518.
Lynch, M. 1996. A quantitative-genetic perspective on conservation issues,
pp. 471-501. In J. Avise and J. Hamrick (eds.) Conservation Genetics: Case
Histories from Nature. Chapman and Hall, New York.
Lynch, M. 1996. Mutation accumulation in transfer RNAs: molecular evidence
for Muller's ratchet in mitochondrial genomes. Mol. Biol. Evol. 13: 209-220.
Deng, H.-W., and M. Lynch. 1996. Change of genetic architecture in response
to sex. Genetics 143: 203-212.
Deng, H.-W., and M. Lynch. 1996. Estimation of deleterious-mutation
parameters in natural populations. Genetics 144: 349-360.
Houle, D., R. Morikawa, and M. Lynch. 1996. Comparing mutational
variabilities. Genetics 143: 1467-1483.
Kibota, T., and M. Lynch. 1996. Estimate of the genomic mutation rate
deleterious to overall fitness in Escherichia coli. Nature 381: 694-696.
Crease, T., S. K. Sung, S. L. Sung, N. Lehman, K. Spitze, and M. Lynch. 1997.
Allozyme and mitochondrial DNA variation in populations of the Daphnia pulex
complex from both sides of the Rocky Mountains. Heredity 79: 242-251.
Deng, H.-W., and M. Lynch. 1997. Inbreeding depression and inferred
deleterious mutation parameters in Daphnia. Genetics 147: 147-155.
Lynch, M. 1997. Mutation accumulation in nuclear, organelle, and prokaryotic
genomes: transfer RNA genes. Mol. Biol. Evol. 14: 914-925.
Schultz, S. T., and M. Lynch. 1997. Deleterious mutation and extinction:
effects of variable mutational effects, synergistic epistasis, beneficial
mutations, and degree of outcrossing. Evolution 51: 1363-1371.
Bürger, R., and M. Lynch. 1997. Adaptation and extinction in changing
environments, pp. 209-240. In R. Bijlsma and V. Loeschcke (eds.) Environmental
Stress, Adaptation and Evolution. Birkhäuser Verlag, Basel.
Lynch, M., and J. Blanchard. 1998. Deleterious mutation accumulation in
organelle genomes. Genetica 102/103: 29-39.
Deng, H.-W., Y.-X. Fu, and Lynch, M. 1998. Inferring the major genomic mode
of dominance and overdominance. Genetica 102/103: 559-567.
Lynch, M., and R. Lande. 1998. The critical effective size for a genetically
secure population. Anim. Cons. 1: 70-72.
Lynch, M., L. Latta, J. Hicks, and M. Giorgianni. 1998. Mutation, selection,
and the maintenance of life-history variation in a natural population. Evolution
52: 727-733.
Vassilieva, L., and M. Lynch. 1999. Accumulation of spontaneous mutations in
Caenorhabditis elegans. Genetics 151: 119-129.
Lynch, M., M. Pfrender, K. Spitze, N. Lehman, D. Allen, J. Hicks, L. Latta,
M. Ottene, F. Bogue, and J. Colbourne. 1999. The quantitative and molecular
genetic architecture of subdivided species. Evolution 53: 100-110.
Lynch, M., and K. Ritland. 1999. Estimation of relatedness with molecular
markers. Genetics 152: 1753-1766.
Lynch, M. 1999. The age and relationships of the major animal phyla.
Evolution 53: 319-325.
Force, A., M. Lynch, B. Pickett, A. Amores, Y.-L. Yan, and J. Postlethwait.
1999. Preservation of duplicate genes by complementary, degenerative mutations.
Genetics 151: 1531-1545.
Lynch, M., J. Blanchard, D. Houle, T. Kibota, S. Schultz, L. Vassilieva, and
J. Willis. 1999. Spontaneous deleterious mutation. Evolution 53: 645-663.
Conery, J. S., and M. Lynch. 1999. Genetic simulation library. Bioinformatics
15: 85-86.
Lynch, M. 1999. Estimation of genetic correlations in natural populations.
Genetical Research 74: 255-264.
Schultz, S. T., M. Lynch, and J. H. Willis. 1999. Spontaneous deleterious
mutation in Arabidopsis. Proc. Natl. Acad. Sci. USA 96: 11393-11398.
Lynch, M., and A. Force. 2000. The probability of duplicate-gene preservation
by subfunctionalization. Genetics 154: 459-473.
Vassilieva, L., A. M. Hook, and M. Lynch. 2000. The fitness effects of
spontaneous mutations in Caenorhabditis elegans. Evolution 54: 1234-1246.
Blanchard, J., and M. Lynch. 2000. Why do mitochondrial genes end up in the
nuclear genome? Trends in Genetics 16: 315-320.
Denver, D., K. Morris, M. Lynch, L. L. Vassilieva, and W. K. Thomas. 2000.
High direct estimate of the mutation rate in the mitochondrial genome of C.
elegans. Science 289: 2342-2344.
Pfrender, M. E., and M. Lynch. 2000. Quantitative genetic variation in
Daphnia: temporal changes in genetic architecture. Evolution 54: 1502-1509.
Lynch, M., and A. Force. 2000. Gene duplication and the origin of
interspecific genomic incompatibility. American Naturalist 156: 590-605.
Pfrender, M. E., K. Spitze, J. Hicks, K. Morgan, L. Latta, and M. Lynch.
2000. Lack of concordance between genetic diversity estimates at the molecular
and quantitative-trait levels. Conservation Genetics 1: 263-269.
Lynch, M., and J. S. Conery. 2000. The evolutionary fate and consequences of
duplicate genes. Science 290: 1151-1154.
Lynch, M. 2000. The limits to knowledge in quantitative genetics. Evol. Biol.
32: 225-237.
Lynch, M., and J. S. Conery. 2001. Gene duplication and evolution: response
to Long and Thornton and Zhang et al. Science 293: 1551a.
Higgins, K., and M. Lynch. 2001. Metapopulation extinction due to mutation
accumulation. Proc. Natl. Acad. Sci. USA 98: 2928-2933.
Morgan, K. K., J. Hicks, K. Spitze, L. Latta, M. Pfrender, C. Ottone, and M.
Lynch. 2001. Patterns of genetic architecture for life-history traits and
molecular markers in a subdivided species. Evolution 55: 1753-1761.
Lynch, M. 2001. The molecular natural history of the human genome. Trends in
Ecology and Evolution 16: 420-422.
Lynch, M., and M. O'Hely. 2001. Supplementation and the genetic fitness of
natural populations. Conservation Genetics 2: 363-378.
Lynch, M., M. O'Hely, B. Walsh, and A. Force. 2001. The probability of
fixation of a newly arisen gene duplicate. Genetics 159: 1789-1804.
Lynch, M. 2002. Intron evolution as a population-genetic process. Proc. Natl.
Acad. Sci. USA 99: 6118-6123.
Lynch, M., and A. Richardson. 2002. The evolution of spliceosomal introns.
Curr. Opin. Gen. Devel. 12: 701-710.
Lynch, M. 2002. Chromosomal repatterning by gene duplication. Science 297:
945-947.
Jackson, R. B., C. R. Linder, M. Lynch, M. Purugannan, and S. Somerville.
2002. Linking molecular insights and ecological research. Trends in Ecology and
Evolution 17: 409-414.
Azevedo, R. B. R., P. D. Keightley, C. Lauren-Maatta, L. L. Vassilieva, M.
Lynch, and A. M. Leroi. 2002. Spontaneous mutational variation for body size in
Caenorhabditis elegans. Genetics 162: 755-765.
Lynch, M., and J. S. Conery. 2003. The evolutionary demography of duplicate
genes, pp. 35-44. In A. Meyer and Y. Van de Peer (eds.), Genome Evolution.
Kluwer Academic Publishers, Dordrecht.
Keightley, P. D., and M. Lynch. 2003. Towards a realistic model of mutations
affecting fitness. Evolution 57: 683-685.
Lynch, M., and A. Kewalramani. 2003. Messenger RNA processing and the
evolutionary proliferation of introns. Mol. Biol. Evol. 20: 563-571.
Baer, C. F., and M. Lynch. 2003. Correlated evolution of life-history with
size at maturity in Daphnia pulicaria: patterns within and between populations.
Genetical Research 81: 123-132.
Estes, S., and M. Lynch. 2003. Rapid recovery of mutation-accumulation lines
by compensatory mutation. Evolution 57: 1022-1030.
Housworth, E., E. Martins, and M. Lynch. 2003. The phylogenetic mixed model.
American Naturalist 163: 84-96.
Lynch, M., and J. S. Conery. 2003. The origins of genome complexity. Science
302: 1401-1404.
Katju, V., and M. Lynch. 2003. The structure and early evolution of recently
arisen gene duplicates in the Caenorhabditis elegans genome. Genetics 165:
1793-1803.
Denver, D. R., S. L. Swenson, and M. Lynch. 2003. An evolutionary analysis of
the helix-hairpin-helix superfamily of DNA repair glycosylases. Molecular
Biology and Evolution 20: 1603-1611.
Lynch, M. 2004. Gene duplication and evolution, pp. 33-47. In A. Moya and E.
Font (eds.), Evolution: From Molecules to Ecosystems. Oxford University Press,
New York, NY.
Estes, S., P. C. Phillips, D. R. Denver, W. K. Thomas, and M. Lynch. 2004.
Mutation accumulation in populations of varying size: The distribution of
mutational effects for fitness correlates in Caenorhabditis elegans. Genetics
166: 1269-1279.
Denver, D. R., K. Morris, M. Lynch, and W. K. Thomas. 2004. High mutation
rate and predominance of insertions in the Caenorhabditis elegans nuclear
genome. Nature 430: 679-682.
Lynch, M., and V. Katju. 2004. The altered evolutionary trajectories of gene
duplicates. Trends in Genetics 20: 544-549.
Denver, D. R., K. Morris, A. Kewalramani, K. Harris, A. Chow, S.
Randell-Estes, M. Lynch, and W. K. Thomas. 2004. Abundance, distribution and
mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis
elegans. J. Mol. Evol. 58: 584-595.
Pfrender, M. E., J. Hicks, and M. Lynch. 2004. Biogeographic patterns and
current distribution of molecular-genetic variation among populations of
speckled dace, Rhinichthys osculus (Girard). Mol. Phylogenet. Evol. 30:
490-502.
Dudycha, J. L., and M. Lynch. 2005. Ontogeny and allometry of resource
allocation in animals with indeterminate growth. Evolution 59: 565-576.
Lynch, M., D. G. Scofield, and X. Hong. 2005. The evolution of
transcription-initiation sites. Mol. Biol. Evol. 22: 1137-1146.
Denver, D. R., K. Morris, J. T. Streelman, S. K. Kim, M. Lynch, and W. K.
Thomas. 2005. The transcriptional consequences of mutation and natural selection
in Caenorhabditis elegans. Nature Genetics 37: 544-548.
Denver, D. R., S. Feinberg, S. Estes, W. K. Thomas, and M. Lynch. 2005.
Mutation rates, spectra and hotspots in mismatch repair-deficient Caenorhabditis
elegans. Genetics 170: 107-113.
Baer, C. F., F. Shaw, C. Steding, M. Baumgartner, A. Hawkins, A. Houppert, N.
Mason, M. Reed, F. Shaw, K. Simonelic, W. Woodward, and M. Lynch. 2005.
Comparative evolutionary genetics of spontaneous mutations affecting fitness in
rhabditid nematodes. Proc. Natl. Acad. Sci. USA 102: 5785-5790.
Colbourne, J. K., B. Robison, K. Bogart, and M. Lynch. 2005. Five hundred and
twenty eight microsatellite markers for ecological genomic investigations using
Daphnia. Mol. Ecol. Notes 4: 485-490.
Force, A., W. Cresko, F. B. Pickett, S. Proulx, C. Amemiya, and M. Lynch.
2005. The origin of gene subfunctions and modular gene regulation. Genetics 170:
433-446.
Paland, S., J. K. Colbourne, and M. Lynch. 2005. Evolutionary history of
contagious asexuality in Daphnia pulex. Evolution 59: 800-813.
Ajie, B. C., S. Estes, M. Lynch, and P. C. Phillips. 2005. Behavioral
degradation under mutation accumulation. Genetics 170: 655-660.
Estes, S., Ajie, B. C., M. Lynch, and P. C. Phillips. 2005. Spontaneous
mutational correlations for life-history, morphological, and behavioral
characters in Caenorhabditis elegans. Genetics 170: 645-653.
Lynch, M. 2005. Intelligent design vs. intelligent evolution. Nature 435:
276.
Lynch, M. 2005. Simple evolutionary pathways to complex proteins. Protein
Science 14: 2217-2225.
Lynch, M., X. Hong, and D. G. Scofield. 2006. Nonsense-mediated decay and the
evolution of eukaryotic gene structure, pp. 197-211. In L. E. Maquat (ed.)
Nonsense-mediated mRNA Decay. Landes Bioscience, Georgetown, TX.
Robinson, C. D., S. Lourido, S. P. Whelan, J. L. Dudycha, M. Lynch, and S.
Isern. 2006. Viral transgenesis of embryonic cell cultures from the freshwater
microcrustacean Daphnia. J. Exp. Zool. 305: 62-67.
Lynch, M. 2006. The origins of eukaryotic gene structure. Mol. Biol. Evol.
23: 450-468.
Paland, S., and M. Lynch. 2006. Transitions to asexuality result in excess
amino-acid substitutions. Science 311: 990-902.
Lynch, M., B. Koskella, and S. Schaack. 2006. Mutation pressure and the
evolution of organelle genome architecture. Science 311: 1727-1730.
Katju, V., and M. Lynch. 2006. On the formation of novel genes by duplication
in the Caenorhabditis elegans genome. Mol. Biol. Evol. 23: 1056-1067.
Cristescu, M. E., J. K. Colbourne, J. Radivojac, and M. Lynch. 2006. A
microsatellite-based genetic linkage map of the waterflea, Daphnia pulex: on the
prospect of crustacean genomics. Genomics 88: 415-430.
Denver, D. R., S. Feinberg, C. Steding, M. Durbin, and M. Lynch. 2006. The
relative roles of three DNA repair pathways in preventing Caenorhabditis elegans
mutation accumulation. Genetics 174: 57-65.
Hong, X., D. G. Scofield, and M. Lynch. 2006. Intron size, abundance, and
distribution within untranslated regions of genes. Mol. Biol. Evol. 23:
2392-2404.
Snoke, M. S., T. U. Berendonk, D. Barth, and M. Lynch. 2006. Elevated
effective population sizes in unicellular eukaryotes. Mol. Biol. Evol. 23:
2474-2479.
Lynch, M. 2006. Streamlining and simplification of microbial genome
architecture. Ann. Rev. Microbiol. 60:327-349.
Omilian, A. R., M. E. A. Cristescu, J. L. Dudycha, and M. Lynch. 2006.
Ameiotic recombination in asexual lineages. Proc. Natl. Acad. Sci. USA 103:
18638-18643.
Scofield, D. G., X. Hong, and M. Lynch. 2007. Position of the final intron in
full-length transcripts: determined by NMD? Mol. Biol. Evol. 24: 896-899.
Lynch, M. 2007. The frailty of adaptive hypotheses for the origins of
organismal complexity. Proc. Natl. Acad. Sci. USA 104 Suppl.: 8597-8604.
Rho, M., J. H. Choi, S. Kim, M. Lynch, and H. Tang. 2007. De novo
identification of LTR retrotransposons in eukaryotic genomes. BMC Genomics 8:
90.
Lynch, M. 2007. The evolution of genetic networks by nonadaptive processes.
Nature Reviews Genetics (in press).
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