Not to take the wind out of anyone's sails, but Tokyo and Kyoto were hit. Research Curtis Le May's incendiary bombing campaign.
Part of the reason Hiroshima and Nagasaki were chosen as A-Bomb targets was the fact they had been pretty much left alone and would give a better idea of how damaging the bombs were.
According to other freepers, and Wikipedia, you're spot on about Tokyo being all but crushed by conventional bombing. However, Kyoto was supposed to have been one of the targets for a nuclear strike. It was deselected because of its heavy cultural impact on Japan (the cultural and traditional capital of Japan).
Is there a way to look at things recently added to a computer (small things, not entire programs, such as plugins, patches, updates, etc.)? Is there some sort of log?