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A new tree of life allows a closer look at the origin of species
European Molecular Biology Laboratory ^ | 02 March 2006 | Staff (press release)

Posted on 03/04/2006 1:05:45 PM PST by PatrickHenry

A global evolutionary map reveals new insights into our last common ancestor

In 1870 the German scientist Ernst Haeckel mapped the evolutionary relationships of plants and animals in the first 'tree of life'. Since then scientists have continuously redrawn and expanded the tree adding microorganisms and using modern molecular data, yet, many parts of the tree have remained unclear. Now a group at the European Molecular Biology Laboratory [EMBL] in Heidelberg has developed a computational method that resolves many of the open questions and produced what is likely the most accurate tree ever. The study, which appears in the current issue of the journal Science, gives some intriguing insights into the origins of bacteria and the last common universal ancestor of all life on earth today.

"DNA sequences of complete genomes provide us with a direct record of evolution", says Peer Bork, Associate Coordinator for Structural and Computational Biology at EMBL, whose group carried out the project. "For a long time the overwhelming amount of data [the human genome alone contains enough information to fill 200 telephone books] has made it very difficult to pinpoint the information needed for a high-resolution map of evolution. But our study shows how this challenge can be tackled by combining different computational methods in an automated process."

Bork's lab specialises in the computational analysis of genomes, and recently they applied this expertise to the tree of life. Since all organisms descend from the same ancestor, they share some common genes. Francesca Ciccarelli and Tobias Doerks of Bork's group managed to identify 31 genes with clear relatives in 191 organisms, ranging from bacteria to humans, to reconstruct their relationships.

"Even using such genes, you might get the wrong answer," says Ciccarelli. "Organisms inherit most genes from their parents, but over the course of evolution, a few have been obtained when organisms swapped genes with their neighbours in a process called horizontal gene transfer [HGT]. Obviously, the latter class of genes does not tell you anything about your ancestors. The trick was to identify and exclude them from the analysis."

"This procedure drastically reduced the 'noise' in the data, making it possible to identify as yet unknown details of early evolution," says Tobias Doerks. "For example, we now know that the first bacterium was probably a type called gram-positive and likely lived at high temperatures – suggesting that all life arose in hot environments."

The improved tree has also shed light on other research carried out by the group. Bork and colleagues are participating in projects that collect genetic material of unknown species en masse from environments such as farm soil and ocean floor. "With the new high-resolution tree in hand, it is now possible to classify genetic material from this unexplored microbial world and further our understanding of life on the planet."

[Omitted contact info.]


TOPICS: Culture/Society; Philosophy
KEYWORDS: crevolist; datadump; drearyolddears
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Please remember to use moderator-compliant FReepSpeaktm. Everybody be nice.
1 posted on 03/04/2006 1:05:48 PM PST by PatrickHenry
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To: VadeRetro; Junior; longshadow; RadioAstronomer; Doctor Stochastic; js1138; Shryke; RightWhale; ...
Evolution Ping

The List-O-Links
A conservative, pro-evolution science list, now with over 350 names.
See the list's explanation, then FReepmail to be added or dropped.
To assist beginners: But it's "just a theory", Evo-Troll's Toolkit,
and How to argue against a scientific theory.

2 posted on 03/04/2006 1:07:01 PM PST by PatrickHenry (Virtual Ignore for trolls, lunatics, dotards, scolds, & incurable ignoramuses.)
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To: PatrickHenry

Didn't I see that image burned into a wheat field last summer?


3 posted on 03/04/2006 1:08:37 PM PST by SlowBoat407 (The best stuff happens just before the thread snaps.)
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To: PatrickHenry

Nice chart!


4 posted on 03/04/2006 1:09:37 PM PST by Coyoteman (I love the sound of beta decay in the morning!)
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To: All
This is a link (slow loading) of a bigger image, which (when loaded) can be clicked on to expand it even larger: Tree of Life.
5 posted on 03/04/2006 1:11:33 PM PST by PatrickHenry (Virtual Ignore for trolls, lunatics, dotards, scolds, & incurable ignoramuses.)
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To: Pharmboy; CobaltBlue

Family Tree Ping, sort of.


6 posted on 03/04/2006 1:14:00 PM PST by martin_fierro (< |:)~)
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To: All
When you enlarge the tree, Homo Sapiens is in the pink section, at about two o'clock.
7 posted on 03/04/2006 1:15:38 PM PST by PatrickHenry (Virtual Ignore for trolls, lunatics, dotards, scolds, & incurable ignoramuses.)
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To: PatrickHenry

12 posts before the hijacking attempts?


8 posted on 03/04/2006 1:17:49 PM PST by ASA Vet (Would you throw a bucket of water on Hillary if her broom were on fire?)
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To: PatrickHenry
When you enlarge the tree, Homo Sapiens is in the pink section, at about two o'clock.

Look at our nearest neighbors to the south. (Are they from your side of the family.)

9 posted on 03/04/2006 1:20:09 PM PST by Coyoteman (I love the sound of beta decay in the morning!)
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To: PatrickHenry
We're next door neighbors to the troglodytes
10 posted on 03/04/2006 1:21:12 PM PST by ASA Vet (Would you throw a bucket of water on Hillary if her broom were on fire?)
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To: Coyoteman

Yeah, but we're at the top of the food chain.


11 posted on 03/04/2006 1:22:37 PM PST by PatrickHenry (Virtual Ignore for trolls, lunatics, dotards, scolds, & incurable ignoramuses.)
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To: PatrickHenry

Thanks for this. Is this related to the Human Genome Project MCDNA data collection (Bradshaw Institute, etc.)?


12 posted on 03/04/2006 1:22:46 PM PST by Mad_Tom_Rackham (A Liberal: One who demands half of your pie, because he didn't bake one.)
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To: Mad_Tom_Rackham

I guess they all use the same data.


13 posted on 03/04/2006 1:23:32 PM PST by PatrickHenry (Virtual Ignore for trolls, lunatics, dotards, scolds, & incurable ignoramuses.)
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To: PatrickHenry

Upun my word, a nice bit of work. (sorry, contaminated by Utah thread)

Serious comment, though: Note that this came out of Europe, not USA. We are falling behind.


14 posted on 03/04/2006 1:25:08 PM PST by From many - one.
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To: PatrickHenry

Yes, of course. Very interesting work.


15 posted on 03/04/2006 1:26:08 PM PST by Mad_Tom_Rackham (A Liberal: One who demands half of your pie, because he didn't bake one.)
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To: SlowBoat407

Item of possible interest:

THE ORIGINS SOLUTION [new 7/96]

http://64.233.179.104/search?q=cache:KHV0fnGdV1MJ:www.iclnet.org/pub/resources/g-824.html+amazon.com+The+Origins+Solution+dick+fischer&hl=en&gl=us&ct=clnk&cd=3


16 posted on 03/04/2006 1:28:15 PM PST by Matchett-PI ( "History does not long entrust the care of freedom to the weak or the timid." -- Dwight Eisenhower)
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To: PatrickHenry

Very interesting approach. But for how many species do we even have one fully mapped genome? And I would love to see how genetic diversity within a species plays into the analysis.


17 posted on 03/04/2006 1:28:19 PM PST by balrog666 (Irrational beliefs inspire irrational acts.)
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To: All
An article on this project, with some background info: Tree of Life.
18 posted on 03/04/2006 1:31:08 PM PST by PatrickHenry (Virtual Ignore for trolls, lunatics, dotards, scolds, & incurable ignoramuses.)
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To: Matchett-PI
THE ORIGINS SOLUTION [new 7/96]

If your link is correct, it leads to a website under construction.

(Maybe it needs another ten years to evolve.)

19 posted on 03/04/2006 1:32:26 PM PST by Coyoteman (I love the sound of beta decay in the morning!)
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To: PatrickHenry

How long will it take the Creationists to Bork up this Tree?


20 posted on 03/04/2006 1:33:21 PM PST by Doctor Stochastic (Vegetabilisch = chaotisch ist der Charakter der Modernen. - Friedrich Schlegel)
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