It depends. If you are asserting a scientific statement and the a priori assumption is not, itself, scientific, then, yes, there is something inherently wrong with it. Otherwise the statement, "Assume that Zeus created the Earth. The Earth exists. Therefore, I have proved the existence of Zeus." would be scientifically sound.
I'm trying to think of the last occasion where proponents of intelligent design invoked the name of Zeus as a scientific entity. Would you please supply an example?