“The clearinghouse is there to avert and resolve those back office issues by gathering facts and applying skilled human judgment so as to resolve problems and claims quickly and fairly.”
It’s considerably more than just applying “judgement” - it is their job to insure that both sides of the transaction have the necessary funds/assets (plus margin) to cover the transaction. They’re like the escrow company in RE transactions.
Here are two securities dealer back office examples in the "we sent the check but it never arrived" department. After a change in the back office mail processing routine, there were several instances of missing checks left in envelopes. To remedy this, every days' accumulation of supposedly empty envelopes had to be filleted open and inspected. About once a month, a missing check was found. In other cases, managers in the local Fed-X or UPS or US Mail processing facility had to be called to "check the belts and bins" for missing envelopes. Several times this resulted in missing express envelopes being found.