I've learned to jumper the master drive as master, the slave drive as slave, and try different drive cables until the bios correctly and instantly recognizes each drive. I keep both 40 and 80 conductor ribbon cables on hand and swap them until the drives work right.
If the bios can't read the drives correctly there will be a hang up during boot while the bios routines try to figure out what's connected on those IDE cables.
The machine boots up fine and even starts Windows. Then I get the Boot disk inaccessible error.