The hypercube you display is a perfect example it's a 4 dimensional object meaning all angles are 90 degrees but when projected down to 2 dimensional screen the best we can do is map it to a 3-dimensional object.
Three dimensions may be a physical constraint of our universe but since all are equations were developed to explain 3 dimension results from experiments why would we expect thermodynamics to predict anything else.
Good biological explanation.
Here is an earlier version of the article, http://arxiv.org/pdf/1502.01843v2.pdf