The difference between simulation and reality?
Let's see - you can have Olive Oil (Popeye's girlfriend) as your prefered simulations ....
.... and I'll have Raquel or Gina Lollobrigida.
THAT is the difference.
I think that the guys studying Neptune's atmosphere just didn't do the calculations and were pleasantly surprised. BTW, moons' shadows on Jupiter are observed and photographed all the time.