Evolution is defined as a change in the DNA of a population.
And the DNA of the population in the experiment I set up does change. DNA for proteins vulnerable to heat change to make proteins that are heat resistant all across the bacterial genome. That is evolution.
When I started out all ten plates had the same DNA from the same ONE bacterium, after I finish I would have ten distinct subpopulatins with new and novel DNA configurations that make them resistant to the stress I subjected them to.
Plenty of people who accept evolution believe in divine intervention as well. For example, the Pope accepts evolution and he seems pretty "religious" to me when it comes to accepting God and Jesus. Atheists make up only 2% of Americans, so as outspoken as they may be, they do not represent the majority of people who believe in evolution.