Not exactly. He has said they have a right to practice their faith given to them by the Judeo-Christian God. He has NOT acknowledged that they have a CONSTITUTIONAL right to practice their faith under the 1st Amendment. THAT'S the free-exercise clause.
Does "religion" mean the same thing in the Establishment Clause and the Free Exercise Clause, or not?
Once again: Rights are granted by God. They are protected by the Constitution.