Free Republic
Browse · Search
News/Activism
Topics · Post Article

Skip to comments.

Artificial Life Experiments Show How Complex Functions Can Evolve
NSF ^ | May 8, 2003 | Staff

Posted on 05/08/2003 10:11:06 AM PDT by Nebullis

Artificial Life Experiments Show How Complex Functions Can Evolve

Arlington, Va.—If the evolution of complex organisms were a road trip, then the simple country drives are what get you there. And sometimes even potholes along the way are important.

An interdisciplinary team of scientists at Michigan State University and the California Institute of Technology, with the help of powerful computers, has used a kind of artificial life, or ALife, to create a road map detailing the evolution of complex organisms, an old problem in biology.

In an article in the May 8 issue of the international journal Nature, Richard Lenski, Charles Ofria, Robert Pennock, and Christoph Adami report that the path to complex organisms is paved with a long series of simple functions, each unremarkable if viewed in isolation. "This project addresses a fundamental criticism of the theory of evolution, how complex functions arise from mutation and natural selection," said Sam Scheiner, program director in the division of environmental biology at the National Science Foundation (NSF), which funded the research through its Biocomplexity in the Environment initiative. "These simulations will help direct research on living systems and will provide understanding of the origins of biocomplexity."

Some mutations that cause damage in the short term ultimately become a positive force in the genetic pedigree of a complex organism. "The little things, they definitely count," said Lenski of Michigan State, the paper's lead author. "Our work allowed us to see how the most complex functions are built up from simpler and simpler functions. We also saw that some mutations looked like bad events when they happened, but turned out to be really important for the evolution of the population over a long period of time."

In the key phrase, "a long period of time," lies the magic of ALife. Lenski teamed up with Adami, a scientist at Caltech's Jet Propulsion Laboratory and Ofria, a Michigan State computer scientist, to further explore ALife.

Pennock, a Michigan State philosopher, joined the team to study an artificial world inside a computer, a world in which computer programs take the place of living organisms. These computer programs go forth and multiply, they mutate and they adapt by natural selection.

The program, called Avida, is an artificial petri dish in which organisms not only reproduce, but also perform mathematical calculations to obtain rewards. Their reward is more computer time that they can use for making copies of themselves. Avida randomly adds mutations to the copies, thus spurring natural selection and evolution. The research team watched how these "bugs" adapted and evolved in different environments inside their artificial world.

Avida is the biologist's race car - a really souped up one. To watch the evolution of most living organisms would require thousands of years – without blinking. The digital bugs evolve at lightening speed, and they leave tracks for scientists to study.

"The cool thing is that we can trace the line of descent," Lenski said. "Out of a big population of organisms you can work back to see the pivotal mutations that really mattered during the evolutionary history of the population. The human mind can't sort through so much data, but we developed a tool to find these pivotal events."

There are no missing links with this technology.

Evolutionary theory sometimes struggles to explain the most complex features of organisms. Lenski uses the human eye as an example. It's obviously used for seeing, and it has all sorts of parts - like a lens that can be focused at different distances - that make it well suited for that use. But how did something so complicated as the eye come to be?

Since Charles Darwin, biologists have concluded that such features must have arisen through lots of intermediates and, moreover, that these intermediate structures may once have served different functions from what we see today. The crystalline proteins that make up the lens of the eye, for example, are related to those that serve enzymatic functions unrelated to vision. So, the theory goes, evolution borrowed an existing protein and used it for a new function.

"Over time," Lenski said, "an old structure could be tweaked here and there to improve it for its new function, and that's a lot easier than inventing something entirely new."

That's where ALife sheds light.

"Darwinian evolution is a process that doesn't specify exactly how the evolving information is coded," says Adami, who leads the Digital Life Laboratory at Caltech. "It affects DNA and computer code in much the same way, which allows us to study evolution in this electronic medium."

Many computer scientists and engineers are now using processes based on principles of genetics and evolution to solve complex problems, design working robots, and more. Ofria says that "we can then apply these concepts when trying to decide how best to solve computational problems."

"Evolutionary design," says Pennock, "can often solve problems better than we can using our own intelligence."


TOPICS: Culture/Society; Miscellaneous; News/Current Events
KEYWORDS: ai; crevolist
Navigation: use the links below to view more comments.
first previous 1-20 ... 41-6061-8081-100 ... 1,961-1,975 next last
To: All
"FR anarcho-loons"


61 posted on 05/08/2003 11:10:30 AM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 58 | View Replies]

To: Chancellor Palpatine
Now wouldn't that be cool.

But that would be fair, so, can't have that, they'd NEVER agree to an actual fair debate.

What I would like to see is the creationists give a list of reasons of why Evolution is not true, then, the evolutionist gets as much time as necessary to refute each point.

That would never be a go either, because if in a true and real debate, the creationists would have some HUGE problems.

Can't have that.
62 posted on 05/08/2003 11:11:43 AM PDT by Aric2000 (Are you on Grampa Dave's team? I am!! $5 a month is all it takes, come join!!!)
[ Post Reply | Private Reply | To 38 | View Replies]

To: AmericanAge
Then why are you supporting evolution?

Oh, probably some of the same reasons the Pope and Catholic Church do. Because it's painfully obvious from the available evidence. As most resonably well-educated adults are aware.

Do you not believe in the Bible?

A broad question. Does the Pope believe in the Bible? How do you account for the Pope believing in both the bible and the Theory of Evolution?

63 posted on 05/08/2003 11:12:02 AM PDT by donh
[ Post Reply | Private Reply | To 54 | View Replies]

To: AmericanAge
Yes, but polls are *statistics* applied on top of the raw data. And unless you're expecting that everyone who is lying, it's the "statistics" that are wrong. Just in the same way that they try to use statistics to "prove" evolution. It's all pseudoscience.

If you go to the web page of the National Academy of Sciences, the world's premier scientific organization, and look under 'Mathematics', you'll find eight individuals who call themselves statisticians. They're all pseudoscientists, are they?

64 posted on 05/08/2003 11:14:27 AM PDT by Right Wing Professor
[ Post Reply | Private Reply | To 52 | View Replies]

To: All
only fools believe in evolution !
65 posted on 05/08/2003 11:15:14 AM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 63 | View Replies]

To: donh
I'm not an athiest, and I belong here at least as much as someone who thinks statistics is a discredited science.

Me too. What's with the sudden identification of conservatism with the flat earth society?

66 posted on 05/08/2003 11:15:44 AM PDT by js1138
[ Post Reply | Private Reply | To 51 | View Replies]

To: AmericanAge
As a Catholic, I'm "permitted" to believe in Evolution provided I acknowledge the following:

1. God did it!
2. He did it freely!
3. He did if from Nothing (Ex Nihilo)
4. At some time during the process, He intervened in order to infuse man with an immortal soul.

While I may have had a rather "radical" priest as an instructor, I was led to believe that certain parts of the Bible (like Genesis and Noah's Ark) can be thought of as "Aetological Myths", which may or may not be strictly factual, but contain deeper, indisputable truths.

Anyway, I believe in God but still want to learn as much about Evolution as possible, just to bolster my own arguments for Intelligent Design.
67 posted on 05/08/2003 11:16:29 AM PDT by Carlucci (Liberalism is the triumph of Emotion over Reason.)
[ Post Reply | Private Reply | To 59 | View Replies]

To: AmericanAge
Am I the only one here who actually cares what the bible has to say???

You're not alone. You have fC to keep you company.

68 posted on 05/08/2003 11:18:06 AM PDT by js1138
[ Post Reply | Private Reply | To 58 | View Replies]

To: AmericanAge
I am not an atheist either, but then again, I don't believe in your bible either, so I guess that would make me an atheist in your eyes anyway.

And so what if Genesis is not supposed to be taken literally, why does that discredit anything in the bible.

I am still trying to figure that out, if the bible is not taken literally, but is taken with the understanding that you will be taught a moral lesson from that story, it is somehow discredited? Why is that?

You guys are hard to figure out sometimes.
69 posted on 05/08/2003 11:18:28 AM PDT by Aric2000 (Are you on Grampa Dave's team? I am!! $5 a month is all it takes, come join!!!)
[ Post Reply | Private Reply | To 54 | View Replies]

To: Lurking Libertarian; PatrickHenry
Yeah, kind of my point. There are conservatives, both religious and otherwise, that have a position on evolution, but there is no "conservative" position on evolution. So I'm wondering why this stuff is posted and debated here.
70 posted on 05/08/2003 11:20:01 AM PDT by RonF
[ Post Reply | Private Reply | To 42 | View Replies]

To: AmericanAge
Yes, but polls are *statistics* applied on top of the raw data.

So if they are wrong, that means the data is wrong, as I just pointed out.

And unless you're expecting that everyone who is lying, it's the "statistics" that are wrong.

If I said Dave is 6 and Tom is 2 and asked you what their difference in age was, and you said 4, but it turned out that you were wrong because Tom is really 5--does that mean algebra is a false science?

Just in the same way that they try to use statistics to "prove" evolution.

Before I bother to respond to this, in In what particular manner do think "they" use statistics to prove evolution?

It's all pseudoscience.

You mean like other sciences that rely heavily on statistics, such as physical astronomy and geology?

71 posted on 05/08/2003 11:20:22 AM PDT by donh
[ Post Reply | Private Reply | To 52 | View Replies]

To: AmericanAge
That's not what the bible says.

Oh! And you have taken it upon yourself to be the arbiter of what the Bible says?

72 posted on 05/08/2003 11:21:23 AM PDT by elbucko
[ Post Reply | Private Reply | To 59 | View Replies]

To: All
what is being taught in public schools ? ?

The fr pat henry ... self appointed mind and lives guardian // czar (( anarcho-loon ))--- of other people's children ---

via govt money -- schools --- very strange -- weird !

ph ...

So why should biologists worry about creationists? It's precisesly for the reason you say -- to prevent irrationality and bogus "science" from being rammed into (and thus ruining) the still-forming minds of innocent children.

271 posted on 05/01/2003 8:03 AM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas.)

fC ...

Atheist cram school --- America ?

73 posted on 05/08/2003 11:22:05 AM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 66 | View Replies]

To: js1138
only fools believe in evolution !


74 posted on 05/08/2003 11:23:52 AM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 68 | View Replies]

To: PatrickHenry
Now he's cutting and pasting your posts.

I don't know if this is a good thing or bad.

FC is starting to scare me, hopefully he lives on the other side of the country.
75 posted on 05/08/2003 11:24:17 AM PDT by Aric2000 (Are you on Grampa Dave's team? I am!! $5 a month is all it takes, come join!!!)
[ Post Reply | Private Reply | To 73 | View Replies]

To: donh
"Does the Pope believe in the Bible?"

Laf, do you really want to get into the Catholics here???
76 posted on 05/08/2003 11:25:47 AM PDT by AmericanAge
[ Post Reply | Private Reply | To 63 | View Replies]

To: Aric2000
Anarcho-loon alert !
77 posted on 05/08/2003 11:25:52 AM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 75 | View Replies]

To: js1138
Oh, so people who take the word of the Bible over the word of evolutionists are "flat-earthers"? What sort of defamation is that??
78 posted on 05/08/2003 11:26:46 AM PDT by AmericanAge
[ Post Reply | Private Reply | To 66 | View Replies]

To: RonF
So I'm wondering why this stuff is posted and debated here.

For the same reason there are endless threads on the Civil War, on religion, on the Hobbit Hole, and lots of other non-election topics. People enjoy them, and Jim Robinson runs a great website.

79 posted on 05/08/2003 11:26:46 AM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas.)
[ Post Reply | Private Reply | To 70 | View Replies]

To: AmericanAge
Next this person is going to start using statistics, a "science" long since disproven. Just ignore them.

Interesting that you say that considering that I've seen quite a few YEC arguments that use "statistics" to "prove" that the formation of the universe, the formation of the solar system and biological evolution are all impossible.
80 posted on 05/08/2003 11:28:07 AM PDT by Dimensio (Sometimes I doubt your committment to Sparkle Motion!)
[ Post Reply | Private Reply | To 3 | View Replies]


Navigation: use the links below to view more comments.
first previous 1-20 ... 41-6061-8081-100 ... 1,961-1,975 next last

Disclaimer: Opinions posted on Free Republic are those of the individual posters and do not necessarily represent the opinion of Free Republic or its management. All materials posted herein are protected by copyright law and the exemption for fair use of copyrighted works.

Free Republic
Browse · Search
News/Activism
Topics · Post Article

FreeRepublic, LLC, PO BOX 9771, FRESNO, CA 93794
FreeRepublic.com is powered by software copyright 2000-2008 John Robinson