During the STS-87 mission, there was a change made on the external tank. Because of NASA's goal to use environmentally friendly products, a new method of "foaming" the external tank had been used for this mission and the STS-86 mission. It is suspected that large amounts of foam separated from the external tank and impacted the orbiter. This caused significant damage to the protective tiles of the orbiter. Foam cause damage to a ceramic tile?! That seems unlikely, however when that foam is combined with a flight velocity between speeds of MACH two to MACH four, it becomes a projectile with incredible damage potential.
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According to NASA, during several previous Space Shuttle flights, including the shuttle launched Nov. 29, 1998, the shuttle external tank experienced a significant loss of foam from the intertank. The material lost caused damage to the thermal protection high-temperature tiles on the lower surface of the shuttle orbiter.
http://www.arnold.af.mil/aedc/newsreleases/1999/99-041.htm