While I cannot support any violence against innocents, this is hardly comparable to Nazi Germany.
The Jews were not engaged in a worldwide campaign of terrorist insurgency, nor had they been killing Germans for 1,000 years.
The BJP, for better or worse, has taken the attitude of "kill or be killed." Unfortunate, but not terribly surprising.
When you paint them all as dangerous, evil people who must be eliminated from the country one way or the other, you are very much espousing the same philosophy as Nazi Germany.
You can either deny that or attempt to justify it. You're attempting to justify it.