The cosmology of Tolkien is EXTREEMLY Christian. Eru was The One God...the Valar were his Arch-Angels, Melkor was the fallen Arch-Angel that created evil and fought against the rest. Wizards were under the employ of the 'good' Arch-Angels. The Balrogs were Melkors equivalent agents
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Then they call on "The One" and he destroys Numenor and removes Valinor from the Earth, so that only magical Elven ships can ever reach it again.
Considering the cataclysm created by God's direct intervention, it's understandable that the Valar didn't call on him more frequently!
I thought the whole story was a great way to have your cake and eat it, too. Monotheism and demi-gods both.