Should they? Yes.
"Does the deep ecology philosophy bear any guilt for those deaths since it advocates reducing the earths population to a fraction of what it is now, even if by natural means like malaria?"
Guilt didn't drive them to insanity, so it really won't affect them either way.
I have no objection to allowing the Earth's population to be reduced. Some of us want to get out of this looney-bin anyway.
I'd like to retire to one of the cloud-cities of Venus.