Here's a better link straight from NYT
http://nytimes.com/2005/10/16/national/16leak.html?ei=5094&en=ae9961705f60a5d9&hp=&ex=1129435200&partner=homepage&pagewanted=print
The first part of the NYT article is essentially throwing Miller under the bus.
The second part is incredibly poorly written. The general drift appears to be that Libby did it and Miller is covering for him. Unfortunately for the NYT and these reporters, Miller simply says it is not true.
I hope Fitzgerald has more substantive information to rely on because Ms Miller's story is so hopelessly confused that any defense lawyer would have a field day with it.
Finally, it is beyond sense that Miller would not know or have connections with CIA analyst involved in WMD proliferation and hence know of Plame. She is clearly not revealing all her sources.