Whoa I didn't say that no "Humean" questions arose. I'm saying that in spite of a supernaturalistic worldview which would seemingly open the door wide for such a thing, which you claimed to be a showstopper, Christian scientists were not stopped in their progress in the scienceS (deliberate capitalization). The sole exception being macroevolution as the story of all life on earth, and for many not even that.
IOW, they acknowledged the doubt and ran with the hypothesis anyhow. Like you seem to have said was a crippling conflict. Except that it isn't: the Bible explicitly points out that Christians' current knowledge is incomplete, that it can be incorrect, and will ultimately be corrected to perfection by God.