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Artificial Life Experiments Show How Complex Functions Can Evolve
NSF ^ | May 8, 2003 | Staff

Posted on 05/08/2003 10:11:06 AM PDT by Nebullis

Artificial Life Experiments Show How Complex Functions Can Evolve

Arlington, Va.—If the evolution of complex organisms were a road trip, then the simple country drives are what get you there. And sometimes even potholes along the way are important.

An interdisciplinary team of scientists at Michigan State University and the California Institute of Technology, with the help of powerful computers, has used a kind of artificial life, or ALife, to create a road map detailing the evolution of complex organisms, an old problem in biology.

In an article in the May 8 issue of the international journal Nature, Richard Lenski, Charles Ofria, Robert Pennock, and Christoph Adami report that the path to complex organisms is paved with a long series of simple functions, each unremarkable if viewed in isolation. "This project addresses a fundamental criticism of the theory of evolution, how complex functions arise from mutation and natural selection," said Sam Scheiner, program director in the division of environmental biology at the National Science Foundation (NSF), which funded the research through its Biocomplexity in the Environment initiative. "These simulations will help direct research on living systems and will provide understanding of the origins of biocomplexity."

Some mutations that cause damage in the short term ultimately become a positive force in the genetic pedigree of a complex organism. "The little things, they definitely count," said Lenski of Michigan State, the paper's lead author. "Our work allowed us to see how the most complex functions are built up from simpler and simpler functions. We also saw that some mutations looked like bad events when they happened, but turned out to be really important for the evolution of the population over a long period of time."

In the key phrase, "a long period of time," lies the magic of ALife. Lenski teamed up with Adami, a scientist at Caltech's Jet Propulsion Laboratory and Ofria, a Michigan State computer scientist, to further explore ALife.

Pennock, a Michigan State philosopher, joined the team to study an artificial world inside a computer, a world in which computer programs take the place of living organisms. These computer programs go forth and multiply, they mutate and they adapt by natural selection.

The program, called Avida, is an artificial petri dish in which organisms not only reproduce, but also perform mathematical calculations to obtain rewards. Their reward is more computer time that they can use for making copies of themselves. Avida randomly adds mutations to the copies, thus spurring natural selection and evolution. The research team watched how these "bugs" adapted and evolved in different environments inside their artificial world.

Avida is the biologist's race car - a really souped up one. To watch the evolution of most living organisms would require thousands of years – without blinking. The digital bugs evolve at lightening speed, and they leave tracks for scientists to study.

"The cool thing is that we can trace the line of descent," Lenski said. "Out of a big population of organisms you can work back to see the pivotal mutations that really mattered during the evolutionary history of the population. The human mind can't sort through so much data, but we developed a tool to find these pivotal events."

There are no missing links with this technology.

Evolutionary theory sometimes struggles to explain the most complex features of organisms. Lenski uses the human eye as an example. It's obviously used for seeing, and it has all sorts of parts - like a lens that can be focused at different distances - that make it well suited for that use. But how did something so complicated as the eye come to be?

Since Charles Darwin, biologists have concluded that such features must have arisen through lots of intermediates and, moreover, that these intermediate structures may once have served different functions from what we see today. The crystalline proteins that make up the lens of the eye, for example, are related to those that serve enzymatic functions unrelated to vision. So, the theory goes, evolution borrowed an existing protein and used it for a new function.

"Over time," Lenski said, "an old structure could be tweaked here and there to improve it for its new function, and that's a lot easier than inventing something entirely new."

That's where ALife sheds light.

"Darwinian evolution is a process that doesn't specify exactly how the evolving information is coded," says Adami, who leads the Digital Life Laboratory at Caltech. "It affects DNA and computer code in much the same way, which allows us to study evolution in this electronic medium."

Many computer scientists and engineers are now using processes based on principles of genetics and evolution to solve complex problems, design working robots, and more. Ofria says that "we can then apply these concepts when trying to decide how best to solve computational problems."

"Evolutionary design," says Pennock, "can often solve problems better than we can using our own intelligence."


TOPICS: Culture/Society; Miscellaneous; News/Current Events
KEYWORDS: ai; crevolist
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To: PatrickHenry
[This ping list is for the evolution -- not creationism -- side of evolution threads.

So much for honest discussion. The ideologues of evolution cannot discuss the facts so all others must be kept away.

981 posted on 05/09/2003 8:00:26 PM PDT by gore3000
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To: js1138
Can someone point me to a scientific article that attempts to explain how Sexual reproduction (as opposed to asexual) evolved and why?-carlucci-

Don't touch that dial. I can't

Then perhaps you should have let someone who does respond instead of making vague allusions (as usual) that the question has been answered numerous times. Where has it been answered? If you read it numerous times how come you do not remember the answer?

982 posted on 05/09/2003 8:03:27 PM PDT by gore3000
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To: Chancellor Palpatine
I'd love to watch a discussion divided into three discreet segments:

Yes, since the 'scientists' of evolution cannot support their theory with scientific facts, then let's turn the thread over to Christianity bashing, at which they are really good at (but of course they will not admit that they are atheists).

983 posted on 05/09/2003 8:06:19 PM PDT by gore3000
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To: donh
I'm not an athiest.

Please donh, you do not believe in God, a Creator, in Christianity, in Budhism, in Islam, in Judaism, or anything that comes close to a religion so please at least be honest with us.

984 posted on 05/09/2003 8:10:05 PM PDT by gore3000
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To: PatrickHenry
The patent lawyers I've known are indeed engineers (who for one reason or another went on to law school).

Probably because of an express desire to become a patent attorney, I imagine - the easiest way to be permitted to sit for the patent bar exam is to have an undergraduate degree in a specified scientific or technical field, as I'm sure you know.

985 posted on 05/09/2003 8:14:06 PM PDT by general_re (Ask me about my vow of silence!)
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To: balrog666
Yes, so please shut up about your personal mythology on a science thread.

Insults are not science and the evolutionists are only insulting. Perhaps it is you who should stop with YOUR personal mythology, ideology and rhetoric and start discussing the facts.

986 posted on 05/09/2003 8:15:42 PM PDT by gore3000
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To: Ten Megaton Solution
You need to prove that a God's little finger is actually doing something. What you posted is not relevant.

Of course it is relevant. Not only has church attendance been shown to lead to longer life as the study showed, but such things as the will to live have strong influence on longevity and overcoming illnesses as any doctor will tell you. There is something in humans which cannot be measured, quantified, or observed. It has no possible material explanation and serves to destroy your petty, simple minded materialistic/atheistic beliefs.

987 posted on 05/09/2003 8:22:57 PM PDT by gore3000
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To: Nakatu X
You are the first, and hopefully only, freeper who has gone completely on my "does not know what the heck he is talking about and therefore his arguments will be discarded" list.

You claim to be a scientist and to know what you speak of while the person you attack does not. So why must you insult instead of taking apart his argument? Why don't you try again and give facts instead of insults to support your position???? Perhaps it is you who is ignorant and are try to bluff those who disagree with you into silence as most evolutionists here try to do?

988 posted on 05/09/2003 8:30:35 PM PDT by gore3000
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To: Ten Megaton Solution
1 : the analysis of a set of facts in their relation to one another 2 : abstract thought : SPECULATION 3 : the general or abstract principles of a body of fact, a science, or an art 4 a : a belief, policy, or procedure proposed or followed as the basis of action b : an ideal or hypothetical set of facts, principles, or circumstances -- often used in the phrase in theory 5 a : a hypothesis assumed for the sake of argument or investigation b : an unproved assumption : CONJECTURE c : a body of theorems presenting a concise systematic view of a subject Theory is assumed, it is conjecture. It is therefore UNPROVEN. Learn before you citisize.
989 posted on 05/09/2003 8:42:32 PM PDT by Michael121
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To: PatrickHenry
Okay, who turned the multi-spectral moron loose on this thread?
990 posted on 05/09/2003 8:43:31 PM PDT by longshadow
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To: donh
An interesting concept that, another 50 years to witness this unfolding of what?

Man, a reasoning, although not necessarily reasonable, creature shall abandon hope and paradise for more time to look forward to machines smarter than himself?

991 posted on 05/09/2003 8:47:07 PM PDT by Old Professer
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To: Ten Megaton Solution
One should walk carefully through a room of elephants.
992 posted on 05/09/2003 8:51:15 PM PDT by Old Professer
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To: gore3000; PatrickHenry
I never claimed to be a scientist, only a not-so-bright student interested in science (as my profile says). And that was not an insult.

I feel that I can judge who knows a smidgen of computer science, and who simply pretends to know computer science.

And there is nothing in his arguments to take apart, he basically framed the whole transistor & GA thing into a "my word against theirs, I'm telling the truth and they're lying" issue... "they" meaning sources that other freepers have posted.

And people who try to convince others that they do indeed know what they're talking about, in any subject, will get instantly discredited by me. AndrewC's great at math, but he'll never get my trust on anything related to computer science again, and he has a long way to go before he'll be trusted by me on other subjects. Simple as that.

BTW... you might want to take a look at Matthew 7:5. If you need to know why, I'm sure PH will be more than happy to re-post that infamous "non-insulting" comment you made from a pulled thread, which is unfortunately not too atypical of what you post.
993 posted on 05/09/2003 8:57:32 PM PDT by Nataku X (Never give Bush any power you wouldn't want to give to Hillary.)
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To: Michael121
Theory is assumed, it is conjecture. It is therefore UNPROVEN.

Alas, an honest statement by an evolutionist! Seems to me that if evolution is conjecture, an assumption, and unproven, then there is absolutely no reason to believe in such an atheistic/materialistic ideology.

994 posted on 05/09/2003 8:59:22 PM PDT by gore3000
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To: Nakatu X
I never claimed to be a scientist.

Sure sounded like it when you said to andrewc in #965:

You DO NOT know a thing about genetic algorithms, artifical intelligence, or artifical life (of which is a "speciality" of artifical intelligence).

If you are not a scientist and cannot refute his statement except by insulting him then it seems to me that you know less than he does. At least he can discuss the question with facts instead of invective.

995 posted on 05/09/2003 9:04:07 PM PDT by gore3000
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To: gore3000
Please donh, you do not believe in God, a Creator, in Christianity, in Budhism, in Islam, in Judaism, or anything that comes close to a religion so please at least be honest with us.

I'll thank you not to tell me what I think.

996 posted on 05/09/2003 9:05:16 PM PDT by donh
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To: Nakatu X
You stated nothing about the operation of anything. All you stated was your opinion. The 17 transistor circuit does exactly what and how? All we have is a statement in a magazine that the circuit performs better than a 9 transistor circuit, both diagrammed in the article. The 9 transistor circuit is actually a modification of the patented circuit which consists of 5 transistors and 4 diodes and no resistors. It has a measured performance on display with the patent. There is no such evidence for the 17 transistor kludge. The specifications are for the circuit to be compact and work to the gigahertz range. There is no evidence that the 17 transistor circuit can achieve those specs.
997 posted on 05/09/2003 9:10:57 PM PDT by AndrewC
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To: Quick1
Yes it does, because our knowledge of it IS science.

Indeed, science is about discovering how nature works. However, since the article itself admits that:

"This project addresses a fundamental criticism of the theory of evolution, how complex functions arise from mutation and natural selection,"

Then evolution is not science and has never been science since it has for the 150 years it has been making that claim been unable to show us how nature works.

998 posted on 05/09/2003 9:11:52 PM PDT by gore3000
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To: Ten Megaton Solution
And what I'll call up will have some basis in observed fact, unlike religious maunderings.

Well, so tell us then how the universe came about considering that in science it has been thoroughly shown that nothing comes from nothing. Also you might tell us how life arose in a completely material way since no scientist has been able to show how such a thing could occur.

999 posted on 05/09/2003 9:18:02 PM PDT by gore3000
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To: CobaltBlue
Which proves what?

That you jump to conclusions. "It" was evidence that believing in a certain something was useful. It was not proof of anything.

1,000 posted on 05/09/2003 9:18:02 PM PDT by AndrewC
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