Free Republic
Browse · Search
News/Activism
Topics · Post Article

Skip to comments.

Artificial Life Experiments Show How Complex Functions Can Evolve
NSF ^ | May 8, 2003 | Staff

Posted on 05/08/2003 10:11:06 AM PDT by Nebullis

Artificial Life Experiments Show How Complex Functions Can Evolve

Arlington, Va.—If the evolution of complex organisms were a road trip, then the simple country drives are what get you there. And sometimes even potholes along the way are important.

An interdisciplinary team of scientists at Michigan State University and the California Institute of Technology, with the help of powerful computers, has used a kind of artificial life, or ALife, to create a road map detailing the evolution of complex organisms, an old problem in biology.

In an article in the May 8 issue of the international journal Nature, Richard Lenski, Charles Ofria, Robert Pennock, and Christoph Adami report that the path to complex organisms is paved with a long series of simple functions, each unremarkable if viewed in isolation. "This project addresses a fundamental criticism of the theory of evolution, how complex functions arise from mutation and natural selection," said Sam Scheiner, program director in the division of environmental biology at the National Science Foundation (NSF), which funded the research through its Biocomplexity in the Environment initiative. "These simulations will help direct research on living systems and will provide understanding of the origins of biocomplexity."

Some mutations that cause damage in the short term ultimately become a positive force in the genetic pedigree of a complex organism. "The little things, they definitely count," said Lenski of Michigan State, the paper's lead author. "Our work allowed us to see how the most complex functions are built up from simpler and simpler functions. We also saw that some mutations looked like bad events when they happened, but turned out to be really important for the evolution of the population over a long period of time."

In the key phrase, "a long period of time," lies the magic of ALife. Lenski teamed up with Adami, a scientist at Caltech's Jet Propulsion Laboratory and Ofria, a Michigan State computer scientist, to further explore ALife.

Pennock, a Michigan State philosopher, joined the team to study an artificial world inside a computer, a world in which computer programs take the place of living organisms. These computer programs go forth and multiply, they mutate and they adapt by natural selection.

The program, called Avida, is an artificial petri dish in which organisms not only reproduce, but also perform mathematical calculations to obtain rewards. Their reward is more computer time that they can use for making copies of themselves. Avida randomly adds mutations to the copies, thus spurring natural selection and evolution. The research team watched how these "bugs" adapted and evolved in different environments inside their artificial world.

Avida is the biologist's race car - a really souped up one. To watch the evolution of most living organisms would require thousands of years – without blinking. The digital bugs evolve at lightening speed, and they leave tracks for scientists to study.

"The cool thing is that we can trace the line of descent," Lenski said. "Out of a big population of organisms you can work back to see the pivotal mutations that really mattered during the evolutionary history of the population. The human mind can't sort through so much data, but we developed a tool to find these pivotal events."

There are no missing links with this technology.

Evolutionary theory sometimes struggles to explain the most complex features of organisms. Lenski uses the human eye as an example. It's obviously used for seeing, and it has all sorts of parts - like a lens that can be focused at different distances - that make it well suited for that use. But how did something so complicated as the eye come to be?

Since Charles Darwin, biologists have concluded that such features must have arisen through lots of intermediates and, moreover, that these intermediate structures may once have served different functions from what we see today. The crystalline proteins that make up the lens of the eye, for example, are related to those that serve enzymatic functions unrelated to vision. So, the theory goes, evolution borrowed an existing protein and used it for a new function.

"Over time," Lenski said, "an old structure could be tweaked here and there to improve it for its new function, and that's a lot easier than inventing something entirely new."

That's where ALife sheds light.

"Darwinian evolution is a process that doesn't specify exactly how the evolving information is coded," says Adami, who leads the Digital Life Laboratory at Caltech. "It affects DNA and computer code in much the same way, which allows us to study evolution in this electronic medium."

Many computer scientists and engineers are now using processes based on principles of genetics and evolution to solve complex problems, design working robots, and more. Ofria says that "we can then apply these concepts when trying to decide how best to solve computational problems."

"Evolutionary design," says Pennock, "can often solve problems better than we can using our own intelligence."


TOPICS: Culture/Society; Miscellaneous; News/Current Events
KEYWORDS: ai; crevolist
Navigation: use the links below to view more comments.
first previous 1-20 ... 561-580581-600601-620 ... 1,961-1,975 next last
To: donh
Must be a strange occupation, watching all this take place.
581 posted on 05/08/2003 5:11:50 PM PDT by Old Professer
[ Post Reply | Private Reply | To 39 | View Replies]

To: f.Christian
No, I only thump watermelons. Now it's my turn to ask you a question:

Is there any possible experiment that would conclusively disprove biblical creation?

Take your time. By the way, American Age isn't agreeing with you. He's laughing at you.

582 posted on 05/08/2003 5:12:29 PM PDT by IowaHawk
[ Post Reply | Private Reply | To 578 | View Replies]

To: IowaHawk
"American Age" is a troll.

LOL! Some of us already had this suspicion ;)
However, sometimes it's really hard to tell a troll from a creationist.

583 posted on 05/08/2003 5:12:52 PM PDT by BMCDA (Lotteries are a tax on people that suck at math)
[ Post Reply | Private Reply | To 573 | View Replies]

To: BMCDA
AmericanAge
Since Jan 19, 2003
view home page, enter name:



~ About ~ Links ~ Contact ~ In Forum ~ Mail To ~ Return


Well, God bless George Bush for the things he's done, to keep this country safe, and keep us #1. We'll kick the a** of those who don't agree, and if they don't like it, they can talk to me! America Rules!

I am not a caricature.

- Karen
584 posted on 05/08/2003 5:13:48 PM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 583 | View Replies]

To: RightWhale
I didn't, it was about.... ummm, it was about.....hmmmm,

Hang on, I'll remember hmmmm........

Oh yeah, it's right there in that little blue box.

Artificial life experiments show how complex functions can evolve.

Yep, that's what it was, now what the heck did that mean again?

LOL ;)
585 posted on 05/08/2003 5:14:21 PM PDT by Aric2000 (Are you on Grampa Dave's team? I am!! $5 a month is all it takes, come join!!!)
[ Post Reply | Private Reply | To 579 | View Replies]

To: Aric2000
Back after a few hours. Gotta skip over a few hundred posts. If I missed anything, I'm not worried about it. It will be endlessly repeated, if not in this thread, then in threads to follow.
586 posted on 05/08/2003 5:14:41 PM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas.)
[ Post Reply | Private Reply | To 580 | View Replies]

To: PatrickHenry
Bump for later read. Only got an hour.
587 posted on 05/08/2003 5:18:38 PM PDT by JusPasenThru (We're through being cool (you can say that again, Dad))
[ Post Reply | Private Reply | To 586 | View Replies]

To: f.Christian
Anarcho-loon nazi atheist alert !
588 posted on 05/08/2003 5:20:14 PM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 584 | View Replies]

To: balrog666
Being a bit testy, are we?
589 posted on 05/08/2003 5:21:04 PM PDT by Old Professer
[ Post Reply | Private Reply | To 525 | View Replies]

To: Old Professer
He has no patience with trolls, can't say that I blame him.
590 posted on 05/08/2003 5:28:26 PM PDT by Aric2000 (Are you on Grampa Dave's team? I am!! $5 a month is all it takes, come join!!!)
[ Post Reply | Private Reply | To 589 | View Replies]

To: IowaHawk
Where you been?

You're too old to be playing with these short pants, let's talk cars.

My dad had a 1937 Hudson Terraplane, even Harrah's museum don't have one of those, no more.

591 posted on 05/08/2003 5:28:53 PM PDT by Old Professer
[ Post Reply | Private Reply | To 573 | View Replies]

To: f.Christian
A loon? talk about the pot calling the kettle black.
592 posted on 05/08/2003 5:29:28 PM PDT by Aric2000 (Are you on Grampa Dave's team? I am!! $5 a month is all it takes, come join!!!)
[ Post Reply | Private Reply | To 588 | View Replies]

To: Aric2000
How many times did you repeat 3rd grade before you dropped out of life -- school ?
593 posted on 05/08/2003 5:32:07 PM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 592 | View Replies]

To: js1138
Ah, but is all killing murder?

Say what? If I meant all killing, I would have said all killing. Words have meaning.

If not, exactly how and where do you draw the line?

You draw the line in this instance at murder, killing unlawfully with malice aforethought.

There is in fact no difference at all between moral absolutism and moral relativism.

In your world obviously. When is it right to murder in a relativist world? In a world of moral absolutes, it is always wrong. The two are mutually exclusive.

Both have to come to grips with the fact that there are actions, consequenses and motives. The differences are found in whose ox is being gored.

I can only shake my head. Most atheists, and I know and respect many, have a strong moral code where there are moral absolutes. It is the genesis of those absolutes that we sometimes debate. You apparently are a relativist who finds comfort in the notion that relativism and absolutism are kissing cousins.

Whatever floats your boat.

594 posted on 05/08/2003 5:33:32 PM PDT by jwalsh07
[ Post Reply | Private Reply | To 481 | View Replies]

To: All
"All flat-earthers are creationists" placemarker.
595 posted on 05/08/2003 5:35:54 PM PDT by PatrickHenry (Felix, qui potuit rerum cognoscere causas.)
[ Post Reply | Private Reply | To 594 | View Replies]

To: PatrickHenry
desperational placemarker
596 posted on 05/08/2003 5:36:55 PM PDT by longshadow
[ Post Reply | Private Reply | To 586 | View Replies]

To: All
to join the homo sapien race (( graduate from animal )) you need a SOUL !
597 posted on 05/08/2003 5:37:19 PM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 594 | View Replies]

To: f.Christian
OOOhhhh, a little hot under the collar FC?

That wasn't a very Christian thing to say.
598 posted on 05/08/2003 5:37:29 PM PDT by Aric2000 (Are you on Grampa Dave's team? I am!! $5 a month is all it takes, come join!!!)
[ Post Reply | Private Reply | To 593 | View Replies]

To: PatrickHenry
all the flatliners are dead -- evolutionists !
599 posted on 05/08/2003 5:38:11 PM PDT by f.Christian (( Marching orders: comfort the afflicted // afflict the comfortable ! ! ))
[ Post Reply | Private Reply | To 595 | View Replies]

To: PatrickHenry
And all evolutionist are Atheists placemarker for me, like I don't have enough on this thread.
600 posted on 05/08/2003 5:38:37 PM PDT by Aric2000 (Are you on Grampa Dave's team? I am!! $5 a month is all it takes, come join!!!)
[ Post Reply | Private Reply | To 595 | View Replies]


Navigation: use the links below to view more comments.
first previous 1-20 ... 561-580581-600601-620 ... 1,961-1,975 next last

Disclaimer: Opinions posted on Free Republic are those of the individual posters and do not necessarily represent the opinion of Free Republic or its management. All materials posted herein are protected by copyright law and the exemption for fair use of copyrighted works.

Free Republic
Browse · Search
News/Activism
Topics · Post Article

FreeRepublic, LLC, PO BOX 9771, FRESNO, CA 93794
FreeRepublic.com is powered by software copyright 2000-2008 John Robinson