The Pope is just mad because Israel is letting the Muslims build a mosque in Bethlehem which will get in the way of a Christian church. Hey Mr. Pope, if you don't support Israel against the hordes of theocidal Muslims, Israel won't support YOU.
If the Vatican doesn't care about the destruction of Jewish holy sites, why should Israel care about the destruction of Christian sites?
What the Vatican cares or doesn't care about should not impact the decisions of the leaders of Israel regarding fundamental issues such as right and wrong. Muslims desecrate the holy places of other religions whether they be Jewish, Christian, or Hindu. The desecration needs to be stopped. It's the right thing to do and that's the bottom line.