Sue again but sue the Secretary of Defense or the Secretary of the Navy who are tasked with implementing the order.
It also looks like the judge is saying to let the entire appeal process to play itself out, and anyone affected gets the boot, until those affected bring charges. To me, that's like saying, "let's wait until the robber stabs me or shots me, then I'll file." That whole premise is so ludicrous it defies comprehension.
Everyone knows, and I'm sure the judge has to know, that the DOD has every intention of booting or firing anyone who doesn't comply, and has no plans to approve any waivers/exemptions. These lawsuits are a preemptive strike to ensure none of that happens, to safeguard our jobs/careers. Evidently that is all lost on our judiciary.