Based on articles I've read over the last 10 years, Erdogan has effectively neutered/purged the Turkish military of its secular-leaning officers - Ataturk's heirs. If this is so, then I do not look for another uprising of "Young Turks" or another Mustafa Kemal Ataturk in the near future.
As of today roughly half the Turkish Admirals and a fifth of the Generals are in prison. Look up the ‘Ergenekon’ plot.