A friend who was working in the design and engine testing phase said that it was a very deliberate choice to go with more engines/smaller engines exactly for the reason of what happened today. The ability to abort the launch AFTER engine start. This is the largest engine they can make that can reliably be shut down after ignition and initial rev up of the engines.
An uncontrolled engine is a constant fear among the designers; the launch vehicle depends upon exact control of all engines throughout the initial launch. If I recall correctly, it's less than a few thousand feet after clearing the tower that the launch vehicle can compensate for engine failures of up to seven of the nine engines and remain in controlled flight.
Some questions come to mind. If it's the center engine, it shouldn't be as critical for control as any of the others. Also, since they only had 1,000 lbs of cargo on-board, and the craft is rated for putting up to 5 tons into orbit, seems they should have had plenty of thrust available to continue with the remaining eight engines; especially if #5 is the center engine.
Do you know if all of these engines are gimbaled? Is #5 an engine critical for flight control?
My hat is off to them! They've certainly accomplished a lot!!
Thanks,