What part of the First Amendment do you not understand?
Congress shall make no law respecting an establishment of religion, or prohibiting the free exercise thereof; or abridging the freedom of speech, or of the press; or the right of the people peaceably to assemble, and to petition the Government for a redress of grievances.
There is nothing in there that prohibits zoning, for one thing. And zoning is essentially based on use and traffic.
Assume you live in some rural or suburban setting, maybe 2 acre lots. Then, out of the blue, your new neighbor, who bought the 2 acres next to you, starts holding daily religious services that draw 2,000 people. Can you invoke zoning, or does your neighbor's 1st amendment right trump you?