Who replaces him.
Will Cuomo pick?
Nope. Special election.
Congressional Representatives, such as Lee, are sometime replaced in a special election called if their is a long portion of their term left, or if the portion is brief, the post can be left vacant for a month or two. I imagine that a special election will be called in the next two weeks if he has officially resigned.
Congressmen can only be elected. There will be a special election.