What theories do you consider proven? And how would they be adjusted by contrary data?
A precise use of the language is required to answer the question. A theory, in the emperical scientific sense of the word, is an analytic structure designed to explain a set of empirical observations. Once proven the structure ceases to be a theory and becomes a principle.
That being said, the theory of relativity (E=MC^2) is pretty well established by the explosion of the atomic bombs.